PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06518g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 184aa    MW: 20819.2 Da    PI: 9.0927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06518g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-09123163954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Niben101Scf06518g02008.1 123 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 163
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-14115173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6124163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-6137168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDLQDIAQSL ELGFSSSNIE MIPLQPQVHK YSNYLMTSPP SNFSFMGNPI EEPNIPIISS  60
IIASAHSSGN EYSCLQNTNS MEAMREMIFR MAMMQPIHID PLSVKPPKRK NVKISKDPQS  120
VAARHRRERI SERIRILQRL VPGGTKMDTA SMLDEAVHYV KFLKKQLQSL EQAAILKYGI  180
CTVE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799029.11e-109PREDICTED: transcription factor HEC1-like
RefseqXP_016488611.11e-109PREDICTED: transcription factor HEC1-like
SwissprotQ9SND46e-48HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A1S4BIC11e-108A0A1S4BIC1_TOBAC; transcription factor HEC1-like
TrEMBLA0A1U7YIF21e-108A0A1U7YIF2_NICSY; transcription factor HEC1-like
STRINGXP_009799029.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]