PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06504g01027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 665aa    MW: 74315.9 Da    PI: 6.4226
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06504g01027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24129229198
                               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                               f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++
  Niben101Scf06504g01027.1 129 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWLFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSF 213
                               99****************************9555555679********************************************* PP

                               EEEE-SSSEE..EEEEE- CS
                        B3  81 vFkldgrsefelvvkvfr 98 
                               vF   + +++el+v+v+r
  Niben101Scf06504g01027.1 214 VFL--RGENGELRVGVRR 229
                               ***..449999*****98 PP
2Auxin_resp100.52.2e-33255334183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               a+ha++t+++F v+Y+Pr+  s+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err++Gt+vg++dl++ +W++S WrsLk
  Niben101Scf06504g01027.1 255 ASHAVTTQTIFVVYYKPRT--SQFIIGLNKYLETVKHGYSVGMRFKMQFEGEESPERRFTGTIVGIEDLSS-QWKDSTWRSLK 334
                               789***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-40120258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-43122244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-21127229No hitNo description
SMARTSM010197.5E-23129231IPR003340B3 DNA binding domain
PfamPF023623.4E-22129229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224129231IPR003340B3 DNA binding domain
PfamPF065072.8E-31255334IPR010525Auxin response factor
PfamPF023092.5E-7552597IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-11555637No hitNo description
PROSITE profilePS5174522.418561642IPR000270PB1 domain
PfamPF023092.2E-5607644IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MENNGCYQSQ QQTNFSAKGK DDLYQELWKL CAGPLVDVPK EGERVYYFPQ GHMEQLEASV  60
NQELNPRIPS FNLQPKILCR VIHTQLLAEQ DTDEVYAQFT LMPEAAEQAE PISQDPCPPE  120
PQRPKVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM NQQTPTQELI AKDLHGTEWL  180
FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRGEN GELRVGVRRL ARQQSSMPSS  240
VISSQSMHLG VLATASHAVT TQTIFVVYYK PRTSQFIIGL NKYLETVKHG YSVGMRFKMQ  300
FEGEESPERR FTGTIVGIED LSSQWKDSTW RSLKVQWDEP ASISRPDRVS PWEIEPFVAS  360
VPNPLVLPMA GKNKRHRPHI ETKNSEPASS IASAVWNPSV DSPQFNTTGI NSSTLTSHTG  420
SGCGWRLPHL NTSSSMLVDE TEDSKSASAW SGFPSILSSQ FSNGTNQPIL SPTDESKCDT  480
ITTCRLFGID LKSTLISTTE APLPKPANIS HVSAEKASPN TVPAVDSDQN SDLSIDFKDQ  540
KQGQLQLLLK EVQSKQNCST RSRTKVQMQG VAVGRAVDLT ALKGYNELIK ELEEMFEIQG  600
ELHPRNKWEI VFTDDEGDMM LMGDHPWLEF CNVVRRIFIV SSQDIKKWSA GNKLLSCADN  660
EAIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1742135717355Auxin response factor 1
4ldw_A1e-1742135717355Auxin response factor 1
4ldw_B1e-1742135717355Auxin response factor 1
4ldx_A1e-1742135717355Auxin response factor 1
4ldx_B1e-1742135717355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764747.10.0PREDICTED: auxin response factor 9-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1U7V9N80.0A0A1U7V9N8_NICSY; Auxin response factor
STRINGXP_009764747.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23472450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9