PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06482g00020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 654aa    MW: 73571.4 Da    PI: 5.8585
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06482g00020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.56.9e-743806371261
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++l+++cA+av+++d + a +lL+++++++ p gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+ 
  Niben101Scf06482g00020.1 380 LRTLMVNCAQAVAADDSKSACELLKQIRQHSYPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYL 461
                               57899***********************************************************999998...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                 +P+ k+s ++ N++I+   e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g   +e++ee g+rLa++
  Niben101Scf06482g00020.1 462 ASCPFRKISSFASNKTIMIKSENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEESGRRLADY 546
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfe+++ +ak++e++++++L+++++E laV + ++ ++l+de+v  +s r+ vL+l+++++P+++++   +  ++++ F
  Niben101Scf06482g00020.1 547 ARSFNVPFEYHA-IAKKWETITVDDLKLDKDEFLAVTCLYRFKNLYDETVIADSSRTVVLNLIRKINPDIFIHGIVNGAYSAPFF 630
                               ************.7*********************************************************************** PP

                      GRAS 254 lerfleal 261
                               ++rf   l
  Niben101Scf06482g00020.1 631 VTRFH-IL 637
                               ***94.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.172354654IPR005202Transcription factor GRAS
PfamPF035142.4E-71380637IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MDPRFNGNPS SLSDFRLGNQ SFPISSDGRM INGPRFELIY PDQKLHNGPK LENSFVQHNF  60
GGVGYINGDR LPSSLESRSN LGVEDDFNED IDFSDVVLSY INQMLMEEEM EDKTDMLQES  120
LELQAKEKSF YEALGKKYPP SPEQNVFINQ YNERTSPDDY FLGSIYNSTS NNSENSGNLF  180
DSRGVNLSMD YNSSYVEGLS FRNISVCSSN SGNTIVDGFL DSPVSSLHIP DIYNESQSIW  240
SFRKGVEEAS KFLPTNNKLL NNDLLSLESK GEAGYVDKND VGEISPTEAR GRKNPQRDDN  300
YTEDERSSKQ AAVFTESTLR SEEFDIVLLH SMGKGEEALE AYRQNLRNAK SKATVQIPKG  360
SKGGKGRGKK QGGKKEVIDL RTLMVNCAQA VAADDSKSAC ELLKQIRQHS YPFGDGNQRL  420
AHCFADGLEA RLAGTGSQIY KALVNKRTSA ADLLKAYHLY LASCPFRKIS SFASNKTIMI  480
KSENATRVHV IDFGILYGFQ WPTFIQRIAE REGGPPKLRI TGIEFPQPGF RPAERIEESG  540
RRLADYARSF NVPFEYHAIA KKWETITVDD LKLDKDEFLA VTCLYRFKNL YDETVIADSS  600
RTVVLNLIRK INPDIFIHGI VNGAYSAPFF VTRFHILYVY DCNFHLASLT LRFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-333636151244Protein SCARECROW
5b3h_D5e-333636151244Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758867.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_016434704.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-171SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S3X4500.0A0A1S3X450_TOBAC; scarecrow-like protein 9
TrEMBLA0A1U7US070.0A0A1U7US07_NICSY; scarecrow-like protein 9
STRINGXP_009758867.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-165GRAS family protein