PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06461g03009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 329aa    MW: 36670.4 Da    PI: 8.2684
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06461g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP41.82.8e-131631934878
                               SEEETTT--SS--S-STTTT-------S--- CS
                       SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                fhelsefD++krsCrr+L++hn+rrr++q+
  Niben101Scf06461g03009.1 163 EFHELSEFDDNKRSCRRKLSDHNARRRRSQP 193
                               6***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575123No hitNo description
PROSITE profilePS5114112.391146191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-15147195IPR004333Transcription factor, SBP-box
PfamPF031102.1E-7163190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDWNLKSHQL EWGWNNNISM CSCSGLEFCR HAETFINEKE VNKAENIKNI YSLDGFSSYS  60
LGHGSSVKSS AEESNNGVVG SVPGFVSMER KEKYSTSGTC TRPGESSIGL NLYPANNEAV  120
TTNYPIFPLS STTAKRCRGS YQLMRNPYCQ VEGCNLDLTS AKEFHELSEF DDNKRSCRRK  180
LSDHNARRRR SQPEANHFSS TGRPSSFHDR QSRTSGSLCG SPSSTSNSMG KSSFRPKNIR  240
GLNTSTSDYK LDVASNLPRR AHSLLSRNSL GLYDPTHTSM EQLIMPASVG ESQPFEHSVT  300
PNWQQVSSEH FQADHQVPFY SPRCFNGSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177189RRKLSDHNARRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780510.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_016441061.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A1S3XM940.0A0A1S3XM94_TOBAC; squamosa promoter-binding-like protein 12
TrEMBLA0A1U7X2200.0A0A1U7X220_NICSY; squamosa promoter-binding-like protein 12
STRINGXP_009780510.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-15squamosa promoter binding protein-like 2