PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06444g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 156aa    MW: 17585.7 Da    PI: 9.4552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06444g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-172069255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  Niben101Scf06444g02001.1 20 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 69
                              69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-362083IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-202078IPR016177DNA-binding domain
PROSITE profilePS5103221.9042077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-292178IPR001471AP2/ERF domain
CDDcd000183.42E-272178No hitNo description
PRINTSPR003672.0E-112132IPR001471AP2/ERF domain
PfamPF008471.5E-102169IPR001471AP2/ERF domain
PRINTSPR003672.0E-115979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MVSMMEGEKR KQRQHQQDKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY SSPVAAARAY  60
DTAVFYLRGP TARLNFPECI VNDDRELHDL SAASIRKKAT EVGARVDALQ TAAALHNNSS  120
AGSTESNSNS HINPGRVTIK PDLNEYPSPE SCEEDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151777263ATERF1
3gcc_A4e-151777263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796242.11e-110PREDICTED: ethylene-responsive transcription factor ERF010-like
RefseqXP_016452686.11e-110PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH944e-54ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1S3YKB51e-108A0A1S3YKB5_TOBAC; ethylene-responsive transcription factor ERF010-like
TrEMBLA0A1U7XW501e-108A0A1U7XW50_NICSY; ethylene-responsive transcription factor ERF010-like
STRINGXP_009796242.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-53DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]