PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06436g05001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 262aa MW: 29916 Da PI: 6.8784

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06436g05001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	5.9e-18	84	133	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a++ ++g Niben101Scf06436g05001.1 84 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALTIKG 133 69**888.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.327	84	141	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	84	133	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.2E-31	84	142	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-35	84	147	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.32E-21	84	142	IPR016177	DNA-binding domain
PRINTS	PR00367	3.3E-10	85	96	IPR001471	AP2/ERF domain
CDD	cd00018	3.30E-30	85	143	No hit	No description
PRINTS	PR00367	3.3E-10	107	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKDQEQRINL EIGADYHRRG FFSNSISNIL NSPSNATSSS SFSFSSSSSD ELTRKDYHSK 60 KSSRNENGEE NKNRKKNEDE KHPTYRGVRK RSWGKWVSEI REPRKKSRIW LGTYPTAQMA 120 ARAHDVAALT IKGNSAYLNF PHLAHQLPRP ASTSPKDIQT AAAKAAAITF PDENEEIRAE 180 PCRVDLPSCH SSTSFFLENT QEIANSLSRE DDDTFFDLPD LSIDVVDQND RYRCPMSTWQ 240 QLIGADTTGF RLEEPFMWEC QR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	82	142	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231547.1	1e-144	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	1e-58	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A314KHA7	1e-143	A0A314KHA7_NICAT; Ethylene-responsive transcription factor erf034
STRING	XP_009791350.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	5e-54	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]