PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06436g02021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 298aa    MW: 33472.6 Da    PI: 6.6276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06436g02021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-191461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+lvd++k++G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf06436g02021.1 14 KGPWTPEEDEKLVDYIKKHGHGSWRSLPNLAGLLRCGKSCRLRWTNYL 61
                              79******************************99************97 PP

2Myb_DNA-binding49.21.2e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++++eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Niben101Scf06436g02021.1  67 RGPFSPEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                               89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.47965IPR017930Myb domain
SuperFamilySSF466891.24E-3111108IPR009057Homeodomain-like
SMARTSM007175.8E-151363IPR001005SANT/Myb domain
PfamPF002492.5E-171461IPR001005SANT/Myb domain
CDDcd001676.92E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129420.30466116IPR017930Myb domain
SMARTSM007179.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.16E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEKLVDYIK KHGHGSWRSL PNLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SPEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLFSMG  120
IDPLTHEPSN GLLRRPPTST SARHMAQWES ARLEAEARLS RESQLLVPSS AGRSETDYFL  180
RIWNSEIGEA FRKFKTEDKC QSPASQISSS TKYGSASGIT TEMDLTFAED TEWKDSQPYT  240
EDILQGSDTS SSSELEDSSE SALQLLLDFP SSNDMSFLGF LSESSLNCSL ADHRVGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256740.10.0PREDICTED: transcription factor MYB80-like
RefseqXP_019256741.10.0PREDICTED: transcription factor MYB80-like
RefseqXP_019256742.10.0PREDICTED: transcription factor MYB80-like
SwissprotQ9M2D91e-123MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1J6HTI50.0A0A1J6HTI5_NICAT; Transcription factor myb39
STRINGXP_009779196.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-116myb domain protein 17