PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06407g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 628aa    MW: 68975.2 Da    PI: 6.0319
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06407g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-11252308155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Niben101Scf06407g01001.1 252 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308
                               57*******************4444.2455535555.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-9252308IPR001471AP2/ERF domain
CDDcd000182.14E-19252318No hitNo description
SuperFamilySSF541718.5E-15252317IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-12253316IPR001471AP2/ERF domain
SMARTSM003801.2E-22253322IPR001471AP2/ERF domain
PROSITE profilePS5103217.385253316IPR001471AP2/ERF domain
PRINTSPR003676.1E-6254265IPR001471AP2/ERF domain
PROSITE profilePS510329.453319381IPR001471AP2/ERF domain
SMARTSM003802.2E-5327387IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-5352382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-6355381IPR001471AP2/ERF domain
PRINTSPR003676.1E-6363383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MNNWLGFSLS AHEELTSQTS QEISGSVDVS GECFDLTSHD STLPSLNVVP HNTPFGIFEA  60
FNRNHQSQDW SSHDPNYKTT SEMSMLMGSS CNTIQHLENQ EPPKLENFLG IGEVQNNNNN  120
INGDYSIYSS VTNTTNNIGS NTNNNTIGLS MIKNWLRNNP NTTTPLENDK KEGEGVVVGG  180
GNNAQSLSLS MSTGGGGSVG GGGGENSCSS ENNKLQQENG NGCNGSIVDG QNNGATEAVP  240
RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEEKAARAYD  300
LAALKYWGPT TTTNFPITNY EKELEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGTQEEA  360
AEAYDIAAIK FRGLNAVTNF EINRYDVKSI LESSTLPIGG AAKRLKDAEQ ADQIALHYQS  420
VSQETIGSHL TNGTISSYGA NANHIWSNIA FQQAQPLNMH YPYSQQQQRL WCKQEVQDSD  480
HMTQNFQDFH QLPHGNIAHN FMQPTSALHN LMGLDTSATS MEHNNVTYQG VGYPSSPSGG  540
FVLPQLSQGN GYGENEVKQL GNENIFGYYH SQQSTSNGSV KAAAFYDHQE SVNGNNWMST  600
AVPVLASRNN TVAICHGGAP TFTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450856.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN21e-120BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A1S3YF420.0A0A1S3YF42_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009801491.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.12e-97AP2 family protein