PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06397g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 492aa    MW: 54103.9 Da    PI: 9.6547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06397g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146888323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C++C+k F r  nL+ H r H
  Niben101Scf06397g04009.1 68 CEICNKGFQRDQNLQLHRRGH 88
                              *******************88 PP
2zf-C2H2140.00015143165123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+ k H +t+
  Niben101Scf06397g04009.1 143 WKCEKCSKKYAVQSDWKAHTKTC 165
                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-76588No hitNo description
Gene3DG3DSA:3.30.160.602.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.116688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035589108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-7138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MMSGDVFSVP SSVKGAVLPH HPQDVLLEPN PNPKANSSSK KRRNLPDPDA EVIALSPKTL  60
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNKQ EIVKKKVYIC PEKSCVHNDP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR ITSVGTCNNL NFNQQPNLVG GISQIGTGFA QDFSGMTSGN  240
SLHHQQQKPR LSLWLNQANN NSQLNNPLHM STPSSNLFAS SSSTGLPDHM VQMQSPNNVF  300
GNQMQWAIDK NTVAPTPATS MTETLSSMYS DNQNQHPKSS TPMSATALLQ KAAQIGSTKS  360
SPAFFTNAFG VMNSSSSSSN TQMFNTLPQT TGEMHQVFAK QSEDYNPTNN GLINGCPNMS  420
SSANTKAINL DQAIMQTVGM QTQAVSFNLD NSLTRDFLGM GNEGGRPFLP QELAKFASMT  480
STMGLSHYSS GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-38139204368Zinc finger protein JACKDAW
5b3h_F3e-38139204368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781292.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
RefseqXP_016463820.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A1S3ZH970.0A0A1S3ZH97_TOBAC; zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A1U7WMW10.0A0A1U7WMW1_NICSY; zinc finger protein JACKDAW-like isoform X2
STRINGXP_009781290.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-104C2H2-like zinc finger protein