PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06397g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family S1Fa-like
Protein Properties Length: 87aa    MW: 9623.4 Da    PI: 10.3062
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06397g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.31.2e-412187470
                      S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                              + ve+kG+nPGlivl vvggl+l fl+gny+ly+yaqk+lPP+kkkPvskkk+kre+lkqGv++PGe
  Niben101Scf06397g02002.1 21 KDVEVKGFNPGLIVLTVVGGLVLAFLIGNYVLYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 87
                              679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190132.0E-62287No hitNo description
PfamPF046894.9E-402387IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MESEADFDPP PSFDNVKNMA KDVEVKGFNP GLIVLTVVGG LVLAFLIGNY VLYMYAQKTL  60
PPKKKKPVSK KKMKRERLKQ GVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627553.16e-56PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016471310.16e-56PREDICTED: DNA-binding protein S1FA-like
SwissprotQ423374e-15S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A1S4A3X31e-54A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like
STRINGXP_009627553.12e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.11e-06S1FA-like DNA-binding protein