PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06394g04023.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 341aa MW: 38597.7 Da PI: 6.7287

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06394g04023.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	44.2	3.2e-14	266	290	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+y ++C+FaHg Niben101Scf06394g04023.1 266 KTELCNKWQETGTCPYSENCQFAHG 290 9***********************8 PP
2	zf-CCCH	19.4	1.9e-06	303	328	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ Niben101Scf06394g04023.1 303 YKTEVCRMVLAGDMCPYGHRCHFRHS 328 9********55********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.7E-17	260	297	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-10	261	296	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.831	264	292	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-7	264	291	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-11	266	290	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-12	298	331	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-9	298	331	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.188	302	330	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-5	302	329	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MQNENTSSDG LNSSTADAAT VPSGNKNYTC SDATSPHLAH NPFLSPTSTH QFDSSEFTQN 60 FYSTFSRSSD SPSLTSYDDI DDITTDGRFH QASYILEYQQ LYNRYTLCLA HLQESIKEVE 120 ALHQENESLR LVNSDLDRRL SLLTQATIQN CLLSDFNRFG LGVNRDSQIS DPRPPNIRPA 180 NVTEPNRPER RNVERVSLPK SISVRSSGYL KLKAQGGKNE GPSQGKTRQK ATNPPLSESQ 240 QRVYFPGSKK EEEAVEFEVY NQGMLKTELC NKWQETGTCP YSENCQFAHG ITELRPVIRH 300 PRYKTEVCRM VLAGDMCPYG HRCHFRHSLT EEERRTGPGL F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	5e-21	266	331	5	70	Butyrate response factor 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594882.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 14
Refseq	XP_009783725.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 14
Refseq	XP_016455236.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 14-like
Refseq	XP_016495180.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 14-like
Swissprot	Q9C9N3	1e-71	C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBL	A0A1S3YSN5	0.0	A0A1S3YSN5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBL	A0A1S4C205	0.0	A0A1S4C205_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBL	A0A1U7XB90	0.0	A0A1U7XB90_NICSY; zinc finger CCCH domain-containing protein 14
STRING	XP_009783725.1	0.0	(Nicotiana sylvestris)
STRING	XP_009594882.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7784	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	8e-69	C3H family protein