PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06378g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 348aa    MW: 38482.6 Da    PI: 4.4799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06378g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.3e-2081131155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr++  +g+WvAeIr+p   + r  r +lg+fgta eAa a+++a+++++g
  Niben101Scf06378g04004.1  81 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAIEAALAYDEAARAMYG 131
                               56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1481131IPR001471AP2/ERF domain
CDDcd000183.90E-3281140No hitNo description
SMARTSM003803.5E-3782145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3182140IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2082139IPR016177DNA-binding domain
PROSITE profilePS5103221.1882139IPR001471AP2/ERF domain
PRINTSPR003671.6E-98394IPR001471AP2/ERF domain
PRINTSPR003671.6E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAILDQASKM TSLPLNCSRK RKSRSRRDGT KNVEETLAKW KEYNQRLDCV DDNGKPVRKV  60
PAKGSKKGCM KGKGGPENSR CNYRGVRQRT WGKWVAEIRE PNRGSRLWLG TFGTAIEAAL  120
AYDEAARAMY GPSARLNLPN YPSSKESSKD DSSWATTSAS DSTAASSLCE ADELKGISEI  180
KFEDGEGESI IDGVTTDIHE TSTPLTSEKH EATSKMGIVE AKESIDQDML KSGRDYLDNL  240
NWDEMFDVEE LLGMLDSAPA DAPGFMQDLD SIAGQKEQYA YSNNQLSNSS FQQQNADDKL  300
LGGTQQMEQQ APIAVDYGFD FLKPGREEDL NFSLDDLALM DFDSELGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1782139260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241183.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1J6K3I90.0A0A1J6K3I9_NICAT; Dehydration-responsive element-binding protein 2c
STRINGXP_009612863.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.18e-39ERF family protein