PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06348g00034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31384.7 Da PI: 9.5389 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.8e-20 | 30 | 80 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Niben101Scf06348g00034.1 30 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 80 799******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-36 | 30 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 30 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-15 | 30 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-32 | 30 | 87 | No hit | No description |
SuperFamily | SSF54171 | 3.4E-20 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-7 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAGTEITKTT IITNTNKSSP QLINKPISRK FVGVRQRPSG RWVAEIKDSS QRVRLWLGTY 60 DTPEEAARAY DEAARALRGE NARTNFASTL SNTNSDHDQS INMLQSNDSK HGLSFSSLKA 120 KISKNLHSIM ARNSENKSSS SKSRVSDHFT FARIFHFKNN YNQYQNHHMD MKKIEKVVQP 180 SIRVLPHVTD NNDLSSWENS SVSDCSSEWT AFRQLGLDSD NGSSDASEYF LGSDPMAGWV 240 SSPDIMSSSS TEGTRSKRFK VSSSVMVPPT FSESPLHGDN Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 30 | 86 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229180.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
TrEMBL | A0A314KLN4 | 1e-166 | A0A314KLN4_NICAT; Ethylene-responsive transcription factor rap2-11 | ||||
STRING | XP_009598443.1 | 1e-157 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12564 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-18 | related to AP2 11 |