PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06328g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 19556.4 Da PI: 8.2074 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 36 | 85 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd s+++ + r++lg+f+tae+Aa a+++a+ +l+g Niben101Scf06328g00004.1 36 YRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEKAALAYDQAAFALHG 85 9*******.**********.3433.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-30 | 34 | 95 | No hit | No description |
Pfam | PF00847 | 4.5E-14 | 35 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 35 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-29 | 35 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-23 | 35 | 95 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.7E-34 | 35 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MLLLNVLSEA GENSSNNNLH VNKHGTNFKE NKGANYRGVR RRPWGKYAAE IRDSTRNSVR 60 VWLGTFDTAE KAALAYDQAA FALHGTMGVL NFPVDIVYRS LMEMECRFEE GCSPVLILKK 120 MHSMKKGKSN MNKKKKEKEM NFENVLVLED LGADYLEEIL RLSEGCCDPS TSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-27 | 32 | 96 | 2 | 66 | ATERF1 |
3gcc_A | 3e-27 | 32 | 96 | 2 | 66 | ATERF1 |
5wx9_A | 1e-26 | 34 | 93 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764919.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_016475341.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-57 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S4AFC5 | 1e-112 | A0A1S4AFC5_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A1U7VRB1 | 1e-112 | A0A1U7VRB1_NICSY; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009764919.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-33 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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