PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06280g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

E2F/DP

Protein Properties

Length: 702aa MW: 79721.8 Da PI: 9.7978

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06280g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.4	5.9e-24	20	85	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+++flkl+ ++ + + l+++a++L v +rRRiYDi+N+Le+++++++k+kn+++w+g Niben101Scf06280g02003.1 20 RKEKSLGLLCSNFLKLCDREGVDSIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYKWNG 85 79***************999********.....****************************98 PP
2	E2F_TDP	71.7	8.1e-23	142	221	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + +k+k RR+YDi+NV+ ++nliek + k++++w+ Niben101Scf06280g02003.1 142 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDmqdpmAMKTKTRRLYDIANVFVSMNLIEKirspdTGKPAFKWI 221 79*****************************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.0E-25	18	86	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.35E-15	19	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	2.5E-27	20	85	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	3.0E-20	21	85	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.9E-19	139	222	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	4.1E-24	142	222	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	1.9E-17	143	221	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	2.72E-10	144	221	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF05007	5.1E-14	474	528	IPR007704	Mannosyltransferase, DXD
Pfam	PF05007	2.4E-36	532	678	IPR007704	Mannosyltransferase, DXD

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006506	Biological Process	GPI anchor biosynthetic process
GO:0005667	Cellular Component	transcription factor complex
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016758	Molecular Function	transferase activity, transferring hexosyl groups

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MSSSVNPEEA QWKNPNIYSR KEKSLGLLCS NFLKLCDREG VDSIGLDNAA DQLGVERRRI 60 YDIVNILESV GVLSRKAKNQ YKWNGFSAIP KAVYLLKKEG LKDQSAVSST SHNVANVIAC 120 NHSDLKEKGQ DKTSGTHKID NRKEKSLMIL AQNFVKLFHC SDVDLISLDK AASALLGDMQ 180 DPMAMKTKTR RLYDIANVFV SMNLIEKIRS PDTGKPAFKW IAWKENPRTG SPAASKSDDS 240 KRRTFGAEIT NTISKRCRAD SSSDLVSNGQ VKRLKVAKDD ELKDKNQEMS TERLNGHGTM 300 DFVFGPFGPA SLPKAGVSGK ENLKQTQNWE DLASIYRPQY QNKAIAMVTL NLKSLLIFSA 360 FLRVFLIVYG EWQDRHMEVR YTDVDYLVFS DAAALVAAGK SPYQRSTYRY SPLIAFLLVP 420 NSFIHPSWGK FIFSASDLFV GFHINNILKL RGVPEKLCTY SVMVWLLNPF TFTIGTRGNC 480 EPIVCAIILW IIICLMKGRL GQAAFWYGLV VHMRIYPIIY ALPIILVLDP LFFQYGTKPA 540 LFLHEALLYH LTRTDPRHNF SIYFYHIYLH YENEFSSLEK LVSFLPQIMT VAFVAFNKVM 600 TAQYFVWFFC LLPLVLPWTN MKLKGKGLVC ILLWMAAQGH WLMWGYLLEF KGKNVFLQLW 660 VAGLLFLAAN TFVLINIIQQ HTYSTVFQQS SPAASKKHVK QG

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MSSSVNPEEA QWKNPNIYSR KEKSLGLLCS NFLKLCDREG VDSIGLDNAA DQLGVERRRI  60
YDIVNILESV GVLSRKAKNQ YKWNGFSAIP KAVYLLKKEG LKDQSAVSST SHNVANVIAC  120
NHSDLKEKGQ DKTSGTHKID NRKEKSLMIL AQNFVKLFHC SDVDLISLDK AASALLGDMQ  180
DPMAMKTKTR RLYDIANVFV SMNLIEKIRS PDTGKPAFKW IAWKENPRTG SPAASKSDDS  240
KRRTFGAEIT NTISKRCRAD SSSDLVSNGQ VKRLKVAKDD ELKDKNQEMS TERLNGHGTM  300
DFVFGPFGPA SLPKAGVSGK ENLKQTQNWE DLASIYRPQY QNKAIAMVTL NLKSLLIFSA  360
FLRVFLIVYG EWQDRHMEVR YTDVDYLVFS DAAALVAAGK SPYQRSTYRY SPLIAFLLVP  420
NSFIHPSWGK FIFSASDLFV GFHINNILKL RGVPEKLCTY SVMVWLLNPF TFTIGTRGNC  480
EPIVCAIILW IIICLMKGRL GQAAFWYGLV VHMRIYPIIY ALPIILVLDP LFFQYGTKPA  540
LFLHEALLYH LTRTDPRHNF SIYFYHIYLH YENEFSSLEK LVSFLPQIMT VAFVAFNKVM  600
TAQYFVWFFC LLPLVLPWTN MKLKGKGLVC ILLWMAAQGH WLMWGYLLEF KGKNVFLQLW  660
VAGLLFLAAN TFVLINIIQQ HTYSTVFQQS SPAASKKHVK QG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4yo2_A	2e-29	19	208	3	222	Transcription factor E2F8
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Functional Description ? help Back to Top
Source	Description
UniProt	Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN-acyl-PI during GPI precursor assembly. {ECO:0000269\|PubMed:15772281}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q500W7	1e-160	PIGM_ARATH; GPI mannosyltransferase 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	2e-85	DP-E2F-like 1

Publications ? help Back to Top
Gillmor CS, et al. Glycosylphosphatidylinositol-anchored proteins are required for cell wall synthesis and morphogenesis in Arabidopsis. Plant Cell, 2005. 17(4): p. 1128-40 [PMID:15772281]