PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06267g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 327aa MW: 36480 Da PI: 8.2103

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06267g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	309.7	9.9e-95	36	327	26	301
GAGA_bind 26 lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtk 106 + m+++aerda+irern+al e+k a+aerdma lqrd+alaern+a+ erd++++al l e s++ +++g ++ g+k Niben101Scf06267g00001.1 36 KTYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNAAIQERDDAIAALRLGESSINdnnvVPDSPGDDTETGAK 120 4579******************************************************9999888763333445566666677 PP GAGA_bind 107 sidslqqlsepqledsavelreeeklealp.i.eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader... 186 +i + qq ++ +++ a + +e + l+ + +++a++ k+++++k+++++k++k +++ k ++ +++ +++ Niben101Scf06267g00001.1 121 HIYNQQQ-MHKTIAEAAHGSTEDPTAGYLKgTdTSEAKNLKKVRRPKESRHNKQAKIPRQGKIGA------ESLNMQVISTSsdd 198 7765555.667777777774333322222202022234444555555555555555555555544......33333333322234 PP GAGA_bind 187 ..............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257 ++ + + +l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++g Niben101Scf06267g00001.1 199 wvnlqeldndkegdMQLTSWKDNLGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGG 283 56688899999999555444569********************************************************** PP GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rKmS+gaf+klL++La++Gydls p+DLkdhWAkHGtn++ t++ Niben101Scf06267g00001.1 284 RKMSGGAFSKLLNRLAGQGYDLSVPLDLKDHWAKHGTNRYSTLK 327 **************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.5E-104	13	327	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.0E-83	36	327	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MIVDAWYLIR VVAGLQRVNP QTTPFNPPDH NNFTIKTYMA IMAERDAAIR ERNMALEERK 60 RAFAERDMAM LQRDAALAER NAAIQERDDA IAALRLGESS INDNNVVPDS PGDDTETGAK 120 HIYNQQQMHK TIAEAAHGST EDPTAGYLKG TDTSEAKNLK KVRRPKESRH NKQAKIPRQG 180 KIGAESLNMQ VISTSSDDWV NLQELDNDKE GDMQLTSWKD NLGLNQINFD ESAMPVPVCS 240 CTGTPQPCYK WGHGGWQSAC CTTTISMYPL PQISNKRYSR VGGRKMSGGA FSKLLNRLAG 300 QGYDLSVPLD LKDHWAKHGT NRYSTLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312785.1	0.0	barley B recombinant-like protein D
Refseq	XP_009789611.1	0.0	PREDICTED: barley B recombinant-like protein D
TrEMBL	A0A1U7XIZ5	0.0	A0A1U7XIZ5_NICSY; barley B recombinant-like protein D
TrEMBL	H1ZN84	0.0	H1ZN84_TOBAC; GAGA-binding transcriptional activator
STRING	XP_009789611.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	2e-81	basic pentacysteine 6