PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06200g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 223aa    MW: 24065 Da    PI: 10.8683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06200g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182675255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrdp   g+++r++lg+f+ta eAaka++ a++ l+g
  Niben101Scf06200g01006.1 26 HYRGVRKRR-WGRYAAEIRDP---GQKTRVWLGTFDTAVEAAKAYDTAARLLRG 75
                              6*****887.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-212683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-302683IPR001471AP2/ERF domain
PfamPF008471.7E-112675IPR001471AP2/ERF domain
SMARTSM003801.0E-362689IPR001471AP2/ERF domain
PROSITE profilePS5103222.2472683IPR001471AP2/ERF domain
CDDcd000186.56E-292682No hitNo description
PRINTSPR003675.1E-102738IPR001471AP2/ERF domain
PRINTSPR003675.1E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAENDLLTGT VAVPTANGGV RSDEVHYRGV RKRRWGRYAA EIRDPGQKTR VWLGTFDTAV  60
EAAKAYDTAA RLLRGRRAIT NFSPTTEDNL MNTRDFMAKL STRNHVNINT NNHGPIQNSD  120
IGSSSGGGGA VRIPLPNQNP QSRHFPVAGC SAPLQLARDR YYVEALTRAG VITNRDPSSQ  180
KKTIDFIGGV VNVGSGRGFP TAPPTTSTRA LNLELTLAPP GNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-181982771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226403.11e-131PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_019242362.11e-131PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A1J6JLH81e-129A0A1J6JLH8_NICAT; Ethylene-responsive transcription factor 4
STRINGXP_009769627.11e-129(Nicotiana sylvestris)
STRINGXP_009591054.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1535068
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-30erf domain protein 9