PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06193g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 426aa    MW: 48145 Da    PI: 5.3124
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06193g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.71.1e-86434141373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl+cA+a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r        + p++t+++   ++   ++ + 
  Niben101Scf06193g00005.1  43 LEKLLLHCANALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASR--------VCPRATNNYLYGSSNLDQRRLM 119
                               5799**************************************************9........5555565555444445566799 PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                                v+ +  f++ + N  I++a+eg++++Hi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rL +
  Niben101Scf06193g00005.1 120 SVTELAGFGFCASNGVIYKAIEGHTKLHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPPVppmLNVSSEEVGQRLVN 204
                               9***********************************************************9888666677889999********* PP

                      GRAS 168 fAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqea 246
                               fA+  +vpfef+v+    +   l+ l++++L+++  E+l+Vn++    +l++e+ + +s   rd +L+ vk+l+P +++vv++++
  Niben101Scf06193g00005.1 205 FAKFRDVPFEFQVIeelnYDMMLSRLSPSTLQLRDAEVLVVNCQNWFRYLPSEQIKGSSisSRDIFLDRVKDLNPCIFTVVDEDS 289
                               *************9766444478889*************************99876665569*********************** PP

                      GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               d++++s+  r++ +++y +  fd+le+ +p++ ++r  +E+  +g +i+n++  eg +r+er e  +k ++r+e++GF +vp+ e
  Niben101Scf06193g00005.1 290 DLGNSSLTSRLATCFNYLWIPFDALETFFPKDGRQRLDYEAD-IGHKIENIIGFEGVQRIERLECCNKFSQRMENSGFMSVPFCE 373
                               ******************************************.****************************************** PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++ k++k+ll +++  g+ +++e++ lvl+Wk+++ v ++aW
  Niben101Scf06193g00005.1 374 ETIKEVKSLLDEHA-SGWGMNKEDDMLVLTWKGHNSVYATAW 414
                               **************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.11117396IPR005202Transcription factor GRAS
PfamPF035143.8E-8443414IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKAELRGNST TIPIQNPNLF NNTQNSLTGA LKGCIGSLDG GCLEKLLLHC ANALENNDVT  60
LAQQVMWVLN NLASSNGDPN QRLTSWFLRA LISRASRVCP RATNNYLYGS SNLDQRRLMS  120
VTELAGFGFC ASNGVIYKAI EGHTKLHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV  180
PSWRPPVPPM LNVSSEEVGQ RLVNFAKFRD VPFEFQVIEE LNYDMMLSRL SPSTLQLRDA  240
EVLVVNCQNW FRYLPSEQIK GSSISSRDIF LDRVKDLNPC IFTVVDEDSD LGNSSLTSRL  300
ATCFNYLWIP FDALETFFPK DGRQRLDYEA DIGHKIENII GFEGVQRIER LECCNKFSQR  360
MENSGFMSVP FCEETIKEVK SLLDEHASGW GMNKEDDMLV LTWKGHNSVY ATAWVLVPPQ  420
MDMRIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-554441488472Protein SHORT-ROOT
5b3h_B5e-564441434418Protein SHORT-ROOT
5b3h_E5e-564441434418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251488.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1J6IIK30.0A0A1J6IIK3_NICAT; Scarecrow-like protein 32
STRINGXP_009631267.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-114GRAS family protein