PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06190g06004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 180aa    MW: 20730.2 Da    PI: 8.0771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06190g06004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-18754253
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                              +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a+  +
  Niben101Scf06190g06004.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAATLM 54
                              69******9.**********8.....334*********************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.82E-34666No hitNo description
PROSITE profilePS5103220.824764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-33764IPR001471AP2/ERF domain
PfamPF008471.9E-11756IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-20765IPR016177DNA-binding domain
SMARTSM003802.2E-39770IPR001471AP2/ERF domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSRPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ATLMCGPRAR  60
RNFPYNDIND SQSSSTKYLS SALIAKLQRC QMKSLNMGKR TATTRLEVQE NQLYAPVNRG  120
DNGIGRRHGQ MSVDMTTNRV AYEADSSTQE FKTLEDHHIE QMIEELLDYG SIELCSVLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17664463ATERF1
3gcc_A3e-17664463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591775.11e-122PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016479743.11e-122PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-64ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4ATA91e-121A0A1S4ATA9_TOBAC; ethylene-responsive transcription factor ERF003-like
STRINGXP_009591775.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]