PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06189g02007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34894 Da PI: 9.426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.6e-08 | 24 | 68 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W ++a++++ g+t +++ + Niben101Scf06189g02007.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68 8********************************.******998886 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 134 | 178 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Niben101Scf06189g02007.1 134 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 178 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.398 | 20 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 5.3E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.0E-11 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.16E-7 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 5.7E-7 | 24 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.663 | 127 | 183 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-17 | 128 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-17 | 130 | 182 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-12 | 131 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 132 | 178 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-13 | 134 | 178 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.92E-11 | 134 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEILSPAPYL SNLSWFRDEE KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKTV 60 VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSPFTLEWG NSHSFDGYKQ SYVVGGKRSL 120 SNRPPEQERK KGIPWTEEEH KLFLMGLKKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI 180 RQLSGGKDKR RASIHDITTI NLNDSQTPSP DHQKPTSIDQ STVISQQPKS ADNAMHKMPF 240 QWSQVNNGFN YAEGTLFMSP PYGGNSYGDT KMQSQSLQQR GAMREPYFGS QSMNFQLQSA 300 QPYYHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-16 | 25 | 98 | 11 | 84 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603384.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_009603385.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016432478.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-143 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3WXT5 | 0.0 | A0A1S3WXT5_TOBAC; transcription factor DIVARICATA-like | ||||
STRING | XP_009603384.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-100 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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