PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06172g03008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 384aa MW: 42786.8 Da PI: 4.5816

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06172g03008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.5	1.7e-16	93	145	3	55
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+e Niben101Scf06172g03008.1 93 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARE 145 4557899********************************************97 PP
2	HD-ZIP_I/II	82.1	8.4e-27	92	145	1	54
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR Niben101Scf06172g03008.1 92 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARE 145 69**************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-16	90	145	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-15	91	152	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.289	92	148	IPR001356	Homeobox domain
CDD	cd00086	2.82E-15	93	145	No hit	No description
Pfam	PF00046	8.8E-14	93	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-16	100	145	IPR009057	Homeodomain-like
PRINTS	PR00031	2.7E-5	119	128	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	2.7E-5	128	144	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MLSGTTGIMA FVPSTPEISI NFQDNHNIPS TSPKVFPSPC NIPHQDFNGI SSMLMRRSMS 60 FSGVERCDNH QDLRVDDNEM SDDDGSSQLL GEKKRRLNLE QVKALERSFE VANKLEPERK 120 IQLARALGLQ PRQIAIWFQN RRARESGGGG APMINLNKEN EGSWSNGSEE NNSIDVNLGT 180 TTTTRTSSGD SPIFYSNNNK NNVFPESSPI PLAQLFHQSS SRSDLQCHKI DPTVPDDHQG 240 FCNMFATPVD DQTNFWPWPE QQQESGGGGA PMINLNKENE GSWSNGSEEN NSIDVNLGTT 300 TTTRTSSGDS PIFYSNNNKN NVFPESSPIP LAQLFHQSSS RSDLQCHKID PTVPDDHQGF 360 CNMFATPVDD QTNFWPWPEQ QQFN

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MLSGTTGIMA FVPSTPEISI NFQDNHNIPS TSPKVFPSPC NIPHQDFNGI SSMLMRRSMS  60
FSGVERCDNH QDLRVDDNEM SDDDGSSQLL GEKKRRLNLE QVKALERSFE VANKLEPERK  120
IQLARALGLQ PRQIAIWFQN RRARESGGGG APMINLNKEN EGSWSNGSEE NNSIDVNLGT  180
TTTTRTSSGD SPIFYSNNNK NNVFPESSPI PLAQLFHQSS SRSDLQCHKI DPTVPDDHQG  240
FCNMFATPVD DQTNFWPWPE QQQESGGGGA PMINLNKENE GSWSNGSEEN NSIDVNLGTT  300
TTTRTSSGDS PIFYSNNNKN NVFPESSPIP LAQLFHQSSS RSDLQCHKID PTVPDDHQGF  360
CNMFATPVDD QTNFWPWPEQ QQFN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016464196.1	1e-171	PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
TrEMBL	A0A1S3ZIL5	1e-169	A0A1S3ZIL5_TOBAC; homeobox-leucine zipper protein ATHB-13-like isoform X1
STRING	XP_009624441.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	4e-32	HD-ZIP family protein