PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06154g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 233aa    MW: 25952.8 Da    PI: 10.9669
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06154g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly173.74e-54631951139
                    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 
                               sv+k+kaal+ ++++ptf++ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++sceffhdp++ +s
  Niben101Scf06154g01005.1  63 SVFKGKAALSAEPRLPTFSKLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISIGTRDSCEFFHDPSMLSS 147
                               79*********************************************************************************** PP

                    Whirly  86 neGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                               n+G+vrk+l+ +P +dG+G+     v+n+ +k n++f+vPv+ aefav+r++++
  Niben101Scf06154g01005.1 148 NAGQVRKSLSFKPNADGTGV-----VNNN-LKNNNRFTVPVTTAEFAVMRTAFS 195
                               *******************6.....4444.78899****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.3E-6851213IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.22E-5956220IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.7E-5264192IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAILKLAGLL RPRNQLLHKR LPGEGVRDSI WQHAINTLAG FSTVRQRIVA DGKLTGRVFA  60
PYSVFKGKAA LSAEPRLPTF SKLDSGGVKL NRRGVIMLTF WPSVGERKYD WEKRQLFALS  120
ATEVGSLISI GTRDSCEFFH DPSMLSSNAG QVRKSLSFKP NADGTGVVNN NLKNNNRFTV  180
PVTTAEFAVM RTAFSFALPH IMGWDRFTNQ PSESISQTPS KVVPQLMETE WDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-106522135172StWhy2
3n1i_A1e-106522135172protein StWhy2
3n1j_A1e-106522135172Protein StWhy2
3n1k_A1e-106522135172protein StWhy2
3n1l_A1e-106522135172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508346.11e-166PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X4
RefseqXP_018625610.11e-166PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4
SwissprotD9J0341e-150WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S4D4P21e-165A0A1S4D4P2_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X4
STRINGXP_009772771.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-80WHIRLY 2