PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06120g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 399aa    MW: 45492.4 Da    PI: 4.8088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06120g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19185235256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Niben101Scf06120g00005.1 185 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 235
                               59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.51E-34184244No hitNo description
Gene3DG3DSA:3.30.730.103.6E-32185243IPR001471AP2/ERF domain
SMARTSM003808.8E-40185248IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22185243IPR016177DNA-binding domain
PROSITE profilePS5103222.932185242IPR001471AP2/ERF domain
PfamPF008472.2E-12186235IPR001471AP2/ERF domain
PRINTSPR003676.5E-11186197IPR001471AP2/ERF domain
PRINTSPR003676.5E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0010200Biological Processresponse to chitin
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MATSEDYGKS IREELDDDNT FERQQRRPVF EEASISRRRF KKIKSPERQH RSQSSSSSYS  60
QQSLSQSSVP YNNPISMSFP PPTSSSKLVF PFSFDGTQPS IQNLYQMGPN TTPLNQNQQQ  120
MISFSPQQCP YPPYFAGELG QSQNQQQLLQ YWNETLNLSP RGRMMMMSRL GQDRPQLQPI  180
NTTKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED AAMAYDREAF KLRGESAKLN  240
FPELFLGKDR EGPSIETVES PHIKQPDQES ENLQLEPLNI ELLPPPQPLP PPEVENQDED  300
SGMGSSEVTA CDEVQGVSLQ STELVWGENE MAEAWFNAIP AGWGPGSPVW DDLDTNNNFI  360
FPSNFHFGNV APHNSDPHNQ HIHDNTDPSS PSCPMRPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21184242160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592157.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S4C0M40.0A0A1S4C0M4_TOBAC; ethylene-responsive transcription factor ERF054-like
STRINGXP_009592157.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-58ERF family protein