PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06117g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 404aa    MW: 45959.9 Da    PI: 4.7634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06117g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19193243256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Niben101Scf06117g01012.1 193 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 243
                               59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.32E-34192252No hitNo description
SuperFamilySSF541719.81E-23193251IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-32193251IPR001471AP2/ERF domain
PROSITE profilePS5103223.024193250IPR001471AP2/ERF domain
SMARTSM003801.4E-39193256IPR001471AP2/ERF domain
PfamPF008472.3E-12194243IPR001471AP2/ERF domain
PRINTSPR003676.6E-11194205IPR001471AP2/ERF domain
PRINTSPR003676.6E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MATSEDYSKS TTAIGEEMDE DNTFERQQRR PVFEEASISR RRFKKIKSPE HQHYSQSSTS  60
SNSQQPLSQS SVPYNNPISM SFPPPPSSSK LIFPFSFDGT QQSIENLYQM RPNTTPLFPP  120
QHQMISFSPQ QCPYPPYFAG ELGQSQNQQQ LLQYWNETLN LSPRGRMMMM GRLGQDNKGL  180
FRPQLQPIST TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEDAA MAYDREAFKL  240
RGENAKLNFP ELFLGKDREG PSIETVETKQ PDEESESVQL EPLNIELLPP PPPPPPPEVD  300
NQDEDSGVGS SEVTACDEVQ GVTLQSTELV WGENEMAEAW FNAIPAGWGP GSPVWDDLDT  360
NNNFIFPSNF HFGNVHSHNS DPHNQHIHDN TDPSSPSCPM RPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21192250160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21192250463ATERF1
3gcc_A3e-21192250463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592157.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S3YRR40.0A0A1S3YRR4_TOBAC; ethylene-responsive transcription factor ERF054-like
STRINGXP_009592157.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-53ERF family protein