PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06113g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 30792 Da PI: 5.2871 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.5e-05 | 132 | 165 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++f+eL ++l + +++K++K+ iL Av+ + +L Niben101Scf06113g00017.1 132 KRFQELSSILEPG---KQPKMDKSVILSDAVRMVVQL 165 68**********9...9**************988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.78E-5 | 60 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-6 | 67 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-8 | 132 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-7 | 132 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 7.3E-4 | 179 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAETEEDGSN WLIELGLMED LPSLEPNAQW PSTAFSLPNN LRARSGACAS DSKAHREKMQ 60 LSSILEPGKQ PKMDKSVILS DAVRMVVQLR DEAQKLKESY DNLQEKVNEL KVSGLDDSYG 120 NSDSLKDCGS KKRFQELSSI LEPGKQPKMD KSVILSDAVR MVVQLRDEAQ KLKESYDNLQ 180 EKVNELKAEK NELRDEKQKL KAEKDKLEQQ LKTTNAQPGF LPHPPAMASP FSAPHQVYAS 240 KMMPYLGYPG IPMWQFVPPA AVDTSEDHAL RPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617474.1 | 1e-114 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 4e-62 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1U7VX29 | 1e-112 | A0A1U7VX29_NICSY; transcription factor ILR3-like | ||||
STRING | XP_009617474.1 | 1e-113 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-64 | bHLH family protein |