PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06076g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28738.7 Da    PI: 10.0661
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06076g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.3e-27959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+ rqvtfskRr g+lKK +E+S+LCda+va+i+fs +gkl+eys+
  Niben101Scf06076g00011.1  9 KRIENKISRQVTFSKRRSGLLKKTHEISILCDADVALIVFSAKGKLFEYST 59
                              79***********************************************96 PP
2K-box97.32.4e-3276173299
                     K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                               ++++ ++++++  e+++ e+ kL ++ie Lqr++Rh++GedL+s +l+e + LeqqL+++lk+iR++Kn+l++e+i++l+kke+e
  Niben101Scf06076g00011.1  76 AERKLNANDSEPKENWTMEYPKLMSRIELLQRNIRHYMGEDLDSFNLREFHGLEQQLDTALKRIRTRKNQLMHESISQLKKKENE 160
                               5566777888889************************************************************************ PP

                     K-box  87 lqeenkaLrkkle 99 
                               lqe+n+ ++kkl+
  Niben101Scf06076g00011.1 161 LQEQNNLMSKKLK 173
                               *******999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.076161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-32292IPR002100Transcription factor, MADS-box
CDDcd002654.70E-41276No hitNo description
PRINTSPR004043.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.5E-2885172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.1988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISILCD ADVALIVFSA KGKLFEYSTE  60
SSMESILERY ESYSYAERKL NANDSEPKEN WTMEYPKLMS RIELLQRNIR HYMGEDLDSF  120
NLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLKKKENE LQEQNNLMSK KLKGTEKQQT  180
AHAQWRHPNP GQSSTPFIPL QSPPHVPNLT IGGPVQSIGF TSTEEGQIRH GSTSLMPPWM  240
LHHLHNKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19174173MEF2 CHIMERA
6byy_B2e-19174173MEF2 CHIMERA
6byy_C2e-19174173MEF2 CHIMERA
6byy_D2e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263716.11e-167PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_019263717.11e-167PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN61e-102FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A314L5X31e-166A0A314L5X3_NICAT; Agamous-like mads-box protein agl8
STRINGXP_009616788.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]