PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06059g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 395aa    MW: 45300.2 Da    PI: 7.8825
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06059g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.49.5e-105999147
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                              s++kGV   + +grW A+I++      ++r++lg+f  ++eAaka+ 
  Niben101Scf06059g01001.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYX 99
                              689***9788.8*********3.....5**********99*****95 PP
2AP234.45.5e-111021401255
                       AP2  12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Niben101Scf06059g01001.1 102 NGRWGAQIYEK-----HQRIWLGTFSDEDEAAKAYDIAAQRFRG 140
                               7*********3.....5**********99*************98 PP
3B398.83.3e-31222317194
                               EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                               f+k+ tpsdv+k++rlv+pk++ae++   + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F
  Niben101Scf06059g01001.1 222 FEKEVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 305
                               89*************************964.45689************************************************* PP

                               EE-SSSEE..EE CS
                        B3  83 kldgrsefelvv 94 
                                + +  +++l++
  Niben101Scf06059g01001.1 306 GRCNGVDKQLYI 317
                               976555555655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-45999IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-105999IPR016177DNA-binding domain
CDDcd000181.90E-2059147No hitNo description
PROSITE profilePS5103218.84860148IPR001471AP2/ERF domain
SMARTSM003806.4E-56098IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-116099IPR001471AP2/ERF domain
SMARTSM003801.3E-1999154IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-13100148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-16100148IPR001471AP2/ERF domain
PfamPF008476.3E-5101140IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.7E-41215324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-32220320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-28221305No hitNo description
PROSITE profilePS5086314.508222322IPR003340B3 DNA binding domain
PfamPF023621.1E-28222319IPR003340B3 DNA binding domain
SMARTSM010191.8E-22222323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGSCCIEQE STTSDSPSFA PTLIPTRLSR MGSGTSSVII DAELNCSIEA ESNKKLPSSR  60
FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYXQ PNGRWGAQIY EKHQRIWLGT  120
FSDEDEAAKA YDIAAQRFRG KDAVTNFKPL CDSEKEEIEI SFLNSRSKAE IVDMLRKHTY  180
NDELEHSKKV CTFEKNDKRE CENALVTSFD VENMSKAREL MFEKEVTPSD VGKLNRLVIP  240
KQHAERYFPL ENNSKGMLLN LEDMNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG  300
DIVSFGRCNG VDKQLYIDWK ARISSTITPI LDKIQDQVQP VKMVRLFGVN ICKVEDVNNI  360
VVENNMSSCS GGKRMREMEL LAFECRKKQR VIDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5521932711122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789826.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9ZWM91e-125RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1U7XJN30.0A0A1U7XJN3_NICSY; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGXP_009789826.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-125related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]