PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06026g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 428aa MW: 47830.6 Da PI: 4.4175 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Niben101Scf06026g00002.1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.88E-31 | 48 | 105 | No hit | No description |
SMART | SM00380 | 1.2E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 49 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-19 | 49 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-27 | 49 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 49 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MARKRRASEG LSENKTRNDD QAGNAAWEEM VKEAAAAAAL GGARQARKRF VGVRQRPSGR 60 WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPSSS SSSSTPALPS 120 KITNLLLNRL KARNNSLAAA AAASSSDSSE PVKIRDQDKQ LEEYRDETAY FSDSQFMEYL 180 KDSEDQITDN SMSTNTSAIA MNNFTNTLEA CLNENGYSVV QPVMKTDEIN SSGGEINNNI 240 VEVDADKEEH EIEEENDSTD IGDIEPIDFH FVDEIGTSFY YSPFEIAEET DSTDTMDQLG 300 MVYGDESLMI SEAMRRMNYE RKFSASLYAF NGISECLKLK LKSGGVAQRE RSEQLSRLRN 360 ACKRNRKEDE KKINEEGIST KMGERKETEY TSQSSSETGQ SSLSEITYES ELSLWSSIDL 420 PPICAFFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-12 | 42 | 105 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768616.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_016469958.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1S4A002 | 0.0 | A0A1S4A002_TOBAC; ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1U7VUI7 | 0.0 | A0A1U7VUI7_NICSY; ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | XP_009768616.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-22 | related to AP2 11 |