PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06026g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 428aa    MW: 47830.6 Da    PI: 4.4175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06026g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-194998255
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Niben101Scf06026g00002.1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98
                              789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-3148105No hitNo description
SMARTSM003801.2E-3649112IPR001471AP2/ERF domain
PfamPF008471.1E-134998IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1949107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-2749105IPR001471AP2/ERF domain
PROSITE profilePS5103219.55949106IPR001471AP2/ERF domain
PRINTSPR003676.5E-85061IPR001471AP2/ERF domain
PRINTSPR003676.5E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MARKRRASEG LSENKTRNDD QAGNAAWEEM VKEAAAAAAL GGARQARKRF VGVRQRPSGR  60
WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPSSS SSSSTPALPS  120
KITNLLLNRL KARNNSLAAA AAASSSDSSE PVKIRDQDKQ LEEYRDETAY FSDSQFMEYL  180
KDSEDQITDN SMSTNTSAIA MNNFTNTLEA CLNENGYSVV QPVMKTDEIN SSGGEINNNI  240
VEVDADKEEH EIEEENDSTD IGDIEPIDFH FVDEIGTSFY YSPFEIAEET DSTDTMDQLG  300
MVYGDESLMI SEAMRRMNYE RKFSASLYAF NGISECLKLK LKSGGVAQRE RSEQLSRLRN  360
ACKRNRKEDE KKINEEGIST KMGERKETEY TSQSSSETGQ SSLSEITYES ELSLWSSIDL  420
PPICAFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1242105971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768616.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016469958.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1S4A0020.0A0A1S4A002_TOBAC; ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1U7VUI70.0A0A1U7VUI7_NICSY; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_009768616.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-22related to AP2 11