PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05998g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 333aa    MW: 38018.5 Da    PI: 6.1809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05998g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49.1e-201663148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT++Ede+l+d++++ G  +W +I+r+ g++R++k+c++rw++yl
  Niben101Scf05998g01004.1 16 KGPWTEDEDEKLIDYINKNGHTNWQLIPRKAGLKRCGKSCRLRWNNYL 63
                              79*********************************************7 PP
2Myb_DNA-binding51.23e-1669114148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg ++ eE+e++++++  lG++ W++Ia +++ gRt++++k++++++l
  Niben101Scf05998g01004.1  69 RGGFSHEEEEIIINLHSVLGNK-WSRIATHLP-GRTDNEIKNFYNTHL 114
                               7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.851167IPR017930Myb domain
SuperFamilySSF466891.31E-2913110IPR009057Homeodomain-like
SMARTSM007171.5E-161565IPR001005SANT/Myb domain
PfamPF002497.9E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241770IPR009057Homeodomain-like
CDDcd001674.43E-131863No hitNo description
PROSITE profilePS5129420.10868118IPR017930Myb domain
SMARTSM007173.5E-1568116IPR001005SANT/Myb domain
PfamPF002492.5E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2671118IPR009057Homeodomain-like
CDDcd001679.19E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRYSCCKLD DNDLKKGPWT EDEDEKLIDY INKNGHTNWQ LIPRKAGLKR CGKSCRLRWN  60
NYLRPDIKRG GFSHEEEEII INLHSVLGNK WSRIATHLPG RTDNEIKNFY NTHLKKKLLK  120
LGIDPKTHKP ISHFQFTSNS NHFVSLESTL RLQAHFTLLA KIQQLINSNL FSSIQGNFLI  180
SPNPLLFHES LKYESGQPQF LDSSLANFTT TIPCLDSTNS LSNDYSSILN SLEVPLGTSD  240
EIETIQRRLA RSFLCNDDMQ KSKDGSNSSG LCQADELNSN ENQVEGVVRA STQGNCNFNQ  300
NFIPTFSELD DIAAWEIPQD DEEINTFWNT IFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131184108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789695.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9S9Z21e-65MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1U7XT940.0A0A1U7XT94_NICSY; transcription factor MYB34-like
STRINGXP_009789695.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-69myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]