PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05993g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 322aa    MW: 36328.6 Da    PI: 5.8378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05993g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1964113255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Niben101Scf05993g01013.1  64 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 113
                               69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-3163122No hitNo description
PfamPF008473.1E-1364113IPR001471AP2/ERF domain
PROSITE profilePS5103222.74864121IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2164122IPR016177DNA-binding domain
SMARTSM003802.4E-3564127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3064122IPR001471AP2/ERF domain
PRINTSPR003672.7E-106576IPR001471AP2/ERF domain
PRINTSPR003672.7E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDERNSIDPL VSCNSAPSKV QPPLQLPAQL VELDFHSVLQ FPAVYTLSSC APRGKGGPQN  60
ALCEYRGVRQ RTWGKWVAEI REPKKRTRLW LGSFATAEEA AMAYDEAARR LYGPDAYLNL  120
PHMRANFNPL NKSQKFKWFS SGNFVSSFPN CTTGLLNLSA QPNVHVIHQR LQELKKTEAS  180
SSSSSISDPK NELHNFSKQP HLTIPQVKEK EVEFSSQNKS VVQEKPQIDL NEFLQQLGIL  240
KRDDDKADKS HDHRISCFIE SEVSLKDDSS VANFFADASY NWDTLGAITG IDDHDQAEET  300
SSFIDAYNVN DELMFPSSIW NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1865126667ATERF1
3gcc_A2e-1865126667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804771.10.0PREDICTED: dehydration-responsive element-binding protein 2F
RefseqXP_016440548.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX53e-74DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1S3XKV10.0A0A1S3XKV1_TOBAC; dehydration-responsive element-binding protein 2F-like
TrEMBLA0A1U7YS460.0A0A1U7YS46_NICSY; dehydration-responsive element-binding protein 2F
STRINGXP_009804771.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-64ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]