PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05919g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 966aa    MW: 105769 Da    PI: 5.777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05919g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181674357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Niben101Scf05919g01007.1 16 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                              6789*****************************************************97 PP
2START167.59.3e-531643712204
                               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS
                     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86 
                               +aee+++e++ ka+ ++  Wv +  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi 
  Niben101Scf05919g01007.1 164 IAEETLAEFLGKATGTAVDWVPMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNILSVIP 247
                               68999*****************************************************.8888888888**************** PP

                               TT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
                     START  87 sg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                               +g  g+++l++ +++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s ++
  Niben101Scf05919g01007.1 248 TGngGTIELIYLQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIH 332
                               **************************************************999998999************************** PP

                               EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                     START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                               +v+h dl++++++++lr+l++s+ + ++kt+va+l++ +
  Niben101Scf05919g01007.1 333 IVDHLDLDAWSVPEVLRPLYESSKILAQKTTVAALRHIR 371
                               ***********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511175IPR001356Homeobox domain
SMARTSM003892.3E-151379IPR001356Homeobox domain
SuperFamilySSF466893.42E-161679IPR009057Homeodomain-like
CDDcd000861.72E-161676No hitNo description
PfamPF000467.4E-161674IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-181874IPR009057Homeodomain-like
CDDcd146861.45E-568107No hitNo description
PROSITE profilePS5084825.682154382IPR002913START domain
CDDcd088751.04E-69158374No hitNo description
Gene3DG3DSA:3.30.530.206.8E-23162368IPR023393START-like domain
SMARTSM002349.8E-50163373IPR002913START domain
PfamPF018521.7E-50164371IPR002913START domain
SuperFamilySSF559616.46E-37164375No hitNo description
PfamPF086706.5E-44690830IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MALCLHNKNQ IMDNSKYVRY TPEQVEALER VYAECPKPTS LRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LTTVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYMKQQI  120
NTVSSTTTDT SCESVVVNGQ QQRKNPTPQH PERDANNPAG LLAIAEETLA EFLGKATGTA  180
VDWVPMIGMK PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR PSWYRDCRCL  240
NILSVIPTGN GGTIELIYLQ TYAPTTLASA RDFWTLRYTT SLEDGSLVIC ERSLTTATGG  300
PTGPPATSFV RAEMLPSGYL IRPCEGGGSM IHIVDHLDLD AWSVPEVLRP LYESSKILAQ  360
KTTVAALRHI RQIAQETSGE IQYTGGRQPA VLRALSQRLC RGFNDAVNGF VDDGWAVMDS  420
DGVEDVTIAI NSSSTKFLGS QYNTLSILPT FGGVLCARAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDAY SAASLKASPY AVPCARPGGF PSSQVILPLA QTVEHEEFLE VVRLEGPAFS  540
PEDIALSRDM YLLQLCSGVD ENASGACAQL VFAPIDESFG DDAPLLPSGF RDGPAATRTL  600
DLASTLEAGT GGTRPAGEIE ASNYNHRSVL TIAFQFAFES HYRDNVAAMA RQYVRSIVGS  660
VQRVAMAIAP SRLSSQLTPK PFPGSPEAVT LARWISRSYR VHTGGDLLQV DSQAGDAVLK  720
QLWHHSDAIM CCSVKMNASA VFTFANQAGL DMLETTLLAL QDIMLDKILD EAGRKVLLSE  780
FSKIMQQGFA YLPAGICVSS MGRPVSYEQA VAWKVLNDED SNHCLAFIVH TGGDLLQVDS  840
QAGDAVLKQL WHHSDAIMCC SVKMNASAVF TFANQAGLDM LETTLLALQD IMLDKILDEA  900
GRKVLLSEFS KIMQQGFAYL PAGICVSSMG RPVSYEQAVA WKVLNDEDSN HCLAFMFINW  960
FSIVAV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228488.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S4CPX60.0A0A1S4CPX6_TOBAC; homeobox-leucine zipper protein ATHB-14-like isoform X1
TrEMBLA0A1U7WKU80.0A0A1U7WKU8_NICSY; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]