PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05919g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 115aa MW: 12878.8 Da PI: 10.2318 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 62.5 | 1.2e-19 | 6 | 83 | 12 | 58 |
CBFB_NFYA 12 qrIlkRRqkRakleeekk...............................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++Il+RRq+ ak+e+e+k l e+ +pylheSRh hAl+R+Rg+gGrF Niben101Scf05919g00004.1 6 HGILRRRQSHAKAESENKllkarkvacpikscnlclrlcvsstktlgvlLYENILQPYLHESRHLHALKRARGCGGRF 83 89**********************************************9889*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.1E-7 | 1 | 86 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 20.515 | 1 | 86 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-16 | 6 | 83 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MQNSNHGILR RRQSHAKAES ENKLLKARKV ACPIKSCNLC LRLCVSSTKT LGVLLYENIL 60 QPYLHESRHL HALKRARGCG GRFQSKKNDE YGDKSLATVN IDSNKIEVTS SENAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226976.1 | 4e-42 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A314KQL3 | 9e-41 | A0A314KQL3_NICAT; Nuclear transcription factor y subunit a-7 | ||||
STRING | XP_009782268.1 | 1e-39 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 8e-19 | nuclear factor Y, subunit A7 |