PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05858g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 265aa    MW: 29625 Da    PI: 9.8865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05858g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-1156100347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rW+++E+  ++ + ++lG g+W+ Ia+++   Rt  q+ s+ qky
  Niben101Scf05858g00007.1  56 RWSEDEHRAFLIGLEKLGRGNWAGIAKEFVPSRTHTQVASHAQKY 100
                               9*****************************9*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.03649105IPR017930Myb domain
TIGRFAMsTIGR015576.3E-1552103IPR006447Myb domain, plants
SuperFamilySSF466893.59E-1552105IPR009057Homeodomain-like
SMARTSM007171.9E-853103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-1153100IPR009057Homeodomain-like
CDDcd001674.58E-856101No hitNo description
PfamPF002492.0E-956100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAKEIHSERR VEISRTKKVG SNSNSIKLFG VVITTNSGSS SSRSNMGRRN SNKGTRWSED  60
EHRAFLIGLE KLGRGNWAGI AKEFVPSRTH TQVASHAQKY FERLEAEKDN KRAVIERQKS  120
SVFDINLAEE SCRSSSPTNQ PVSEEASWSK RVVVPVTKDK EPLNQETPIS PMPISYRVPG  180
FPPVPMAYNK NLTISSNDQG PHVYAASWVP NIQFYGNYAY FPMSYYQFAN ISAHNFASSS  240
TNATPDQRVS SQSDRASVDN LDLTI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442573.10.0PREDICTED: myb-like protein J
TrEMBLA0A1S3XRK00.0A0A1S3XRK0_TOBAC; myb-like protein J
STRINGXP_009802911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-25MYB_related family protein