PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf05858g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 265aa MW: 29625 Da PI: 9.8865 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.6 | 1.1e-11 | 56 | 100 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rW+++E+ ++ + ++lG g+W+ Ia+++ Rt q+ s+ qky Niben101Scf05858g00007.1 56 RWSEDEHRAFLIGLEKLGRGNWAGIAKEFVPSRTHTQVASHAQKY 100 9*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.036 | 49 | 105 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 6.3E-15 | 52 | 103 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.59E-15 | 52 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-8 | 53 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-11 | 53 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.58E-8 | 56 | 101 | No hit | No description |
Pfam | PF00249 | 2.0E-9 | 56 | 100 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MAKEIHSERR VEISRTKKVG SNSNSIKLFG VVITTNSGSS SSRSNMGRRN SNKGTRWSED 60 EHRAFLIGLE KLGRGNWAGI AKEFVPSRTH TQVASHAQKY FERLEAEKDN KRAVIERQKS 120 SVFDINLAEE SCRSSSPTNQ PVSEEASWSK RVVVPVTKDK EPLNQETPIS PMPISYRVPG 180 FPPVPMAYNK NLTISSNDQG PHVYAASWVP NIQFYGNYAY FPMSYYQFAN ISAHNFASSS 240 TNATPDQRVS SQSDRASVDN LDLTI |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016442573.1 | 0.0 | PREDICTED: myb-like protein J | ||||
TrEMBL | A0A1S3XRK0 | 0.0 | A0A1S3XRK0_TOBAC; myb-like protein J | ||||
STRING | XP_009802911.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13677 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61620.1 | 1e-25 | MYB_related family protein |