PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05855g06014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 276aa    MW: 30705.8 Da    PI: 7.7758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05855g06014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-1899148255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                ++GVr +  +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  Niben101Scf05855g06014.1  99 TFRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 148
                               59****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.18299156IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2199157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3199157IPR001471AP2/ERF domain
SMARTSM003801.9E-3599162IPR001471AP2/ERF domain
PfamPF008471.5E-12100148IPR001471AP2/ERF domain
CDDcd000187.01E-32100158No hitNo description
PRINTSPR003674.6E-10100111IPR001471AP2/ERF domain
PRINTSPR003674.6E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEDHHLHLEF SISSSSSSSS SIISSSFASS SNGLNYPSTT TSSTSSSSFH ETINARTPSN  60
NGYTCKSKKS SKIVQDFTKN GNEENKKKRK NEGDEKHPTF RGVRKRNWGK WVSEIRQPRK  120
KSRIWLGTYP TAEMAARAHD VAALAIKGNS AYLNFPHLAD QLPRPASTSP KDIQAAAAKA  180
ATNTFLEKNS IGNEAESSQI ELHSSHSLTD LASKNAQELL NSPSMDHDDT FFYLPDLSID  240
QMAQNDRYQY PISTWQLAGA DSGVYRLEEP FLWECY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18961571173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771308.11e-151PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ73e-64ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U7VY641e-149A0A1U7VY64_NICSY; ethylene-responsive transcription factor ERF039-like
STRINGXP_009771308.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]