PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05849g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 399aa    MW: 45717.6 Da    PI: 4.456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05849g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-1771128255
                       AP2   2 gykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg+f t  +Aa a+++a+k ++g
  Niben101Scf05849g00002.1  71 IYRGVRQRI-WGKWVAEIREpVYISGqyKTsgKRLWLGTFSTSVDAALAYDEAAKVMYG 128
                               69****998.**********666677785578***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1270128IPR001471AP2/ERF domain
CDDcd000181.28E-2870137No hitNo description
PROSITE profilePS5103221.62871136IPR001471AP2/ERF domain
SMARTSM003802.2E-3071144IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1871137IPR016177DNA-binding domain
PRINTSPR003671.0E-87283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2772137IPR001471AP2/ERF domain
PRINTSPR003671.0E-8102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSSHILQRKQ KRRRNGCDSL EEILLKWKNH YQEINSSTED VQVKKKRKIS VKRSRKGGIQ  60
GKGGPENSGC IYRGVRQRIW GKWVAEIREP VYISGQYKTS GKRLWLGTFS TSVDAALAYD  120
EAAKVMYGSN AILNFPDYCI QNDSLSTFTI ARTSSPESID QSSVDHEDSG AEDAKIRVDQ  180
SAFATSVVTE DEKQRSCCCC LTEKSDVMPE EDYENELNDS GCSSRTDSQP PNCGVKVETP  240
IKEEIEKDEF VHDKDLERLN SNEVSNSLHI MDEETTDVKP QDLNILQEPL DFRSSENPSE  300
DFCKRLEYME RWLMEDDCSI EATKFLEESF HFKPMIVPQD SAELNYVKNE EQFDCTYSQQ  360
IDKQTDGIVS NQADWNSLIS PQQEENIKDL SIFNFDFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1972136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1972136663ATERF1
3gcc_A3e-1972136663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613QRKQKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255162.10.0PREDICTED: uncharacterized protein LOC109233752
TrEMBLA0A1J6ISK40.0A0A1J6ISK4_NICAT; Dehydration-responsive element-binding protein 2c
STRINGXP_009597142.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-34ERF family protein