PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05836g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 402aa    MW: 43123.3 Da    PI: 6.5979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05836g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-1759104147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Niben101Scf05836g05004.1  59 KGPWSQEEDAVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 104
                               79******************************.***********985 PP
2Myb_DNA-binding58.71.3e-18111155147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               r+++T+eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Niben101Scf05836g05004.1 111 RKPFTEEEDNIIINAHAVHGNR-WASIAKLLP-GRTDNAIKNHWNST 155
                               789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.87954105IPR017930Myb domain
SuperFamilySSF466892.05E-3156152IPR009057Homeodomain-like
SMARTSM007174.1E-1558107IPR001005SANT/Myb domain
PfamPF002491.4E-1659104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2660112IPR009057Homeodomain-like
CDDcd001672.41E-1461103No hitNo description
PROSITE profilePS5129426.908106160IPR017930Myb domain
SMARTSM007175.6E-18110158IPR001005SANT/Myb domain
PfamPF002491.1E-16111155IPR001005SANT/Myb domain
CDDcd001674.63E-14113156No hitNo description
Gene3DG3DSA:1.10.10.608.1E-25113159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEDEAEQSNF KVRDAAVNDG DTSAIAFKAL DDSDAMLPDG GGDGNSGGGG GGGGGGKVKG  60
PWSQEEDAVL SELVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RKPFTEEEDN  120
IIINAHAVHG NRWASIAKLL PGRTDNAIKN HWNSTLRRRF AGVRKVKPVH CERLENSSID  180
RVKVSSEETK SFEDHNQSKA QAAGEVILMQ CEPSHFEDRS PTNEMSAAPE KIPHVVSGRC  240
HSTIMVKNPS VSRPIAKIGA FDVFNLSSAA FASSRTVPVQ GPLLQVSSPP FGICKLLEGV  300
SDDPVIPLRC GHGCCSAPSM SFSGSSLLGP EFVEYEELPA VSSRELTAIA TDLNSIAWIK  360
SGLNAGRLSG RTTSQRNYQD SSTSTPMLMS NFTLPNEVES LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-43581596107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434457.10.0PREDICTED: transcription factor MYB122-like
TrEMBLA0A1S3X3J00.0A0A1S3X3J0_TOBAC; transcription factor MYB122-like
STRINGXP_009781248.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-97myb domain protein 109