PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05827g07015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 382aa    MW: 42272.6 Da    PI: 4.4745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05827g07015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18120169255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  Niben101Scf05827g07015.1 120 RYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDVEARRIRG 169
                               7********.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-36120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32120179IPR001471AP2/ERF domain
CDDcd000183.48E-33120178No hitNo description
SuperFamilySSF541713.33E-22120179IPR016177DNA-binding domain
PROSITE profilePS5103224.329120177IPR001471AP2/ERF domain
PfamPF008471.7E-11120169IPR001471AP2/ERF domain
PRINTSPR003671.1E-11121132IPR001471AP2/ERF domain
PRINTSPR003671.1E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCGGAIISDC IPPTRSSRRL TADLLWGCSD LNQKKNPFSY EYSKPLRSEV ADLGIDFEAD  60
FQDFKDCSDD EEDSYKVDGL KPFAFSAPEQ SGASVGSKSL KSVDSDMEVE KSSKRKRKNR  120
YRGIRQRPWG KWAAEIRDPQ KGVRVWLGTF NTAEEAARAY DVEARRIRGK KAKVNFPDEA  180
PVPASRQAGT VNPRKESSNP VLSNTTSVKK LDDGYYYNPG FFEEKPTKKL GYEDLCPTPG  240
PNSFAPPAAA CVYFSSDQGS NSFEPSDFGW GETCSRTPEV SSVLSAAVES HEAQFVEGAC  300
AEEKIESCSN MSVPNDGNTA PKLSEELSTF ESQMNFFQTQ QSEGNLDASV DAFLNADATQ  360
DVENEMDLWF FDELSSLVRG VY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21121177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788612.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016438849.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1S3XGA80.0A0A1S3XGA8_TOBAC; ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1U7X9260.0A0A1U7X926_NICSY; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_009788612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-49related to AP2 12