PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05827g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 189aa    MW: 20991.6 Da    PI: 4.3414
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05827g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB76.63.7e-241199391
                     NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89
                              ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+r+ti+++ +l al  lGf +y+e++ +  ++
  Niben101Scf05827g02001.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALEVLGFGEYIEEVYAAYEQ 97
                              6899***************************************************************************99876666 PP

                     NF-YB 90 yr 91
                              +r
  Niben101Scf05827g02001.1 98 HR 99
                              66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-388139IPR009072Histone-fold
SuperFamilySSF471133.35E-3412142IPR009072Histone-fold
PfamPF008089.0E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEPMDIVGKN KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE  60
VCNREERRTI APEHVLKALE VLGFGEYIEE VYAAYEQHRL ETMDTVRSGR CSNGAAMTEE  120
EALAEQQRMF AEARARMNGS ATVPAKQPDS EEALAEQQRM FAEAHAGMNG GVTVPSKQPD  180
SEVDQNLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-351013410133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782371.11e-138PREDICTED: protein Dr1 homolog
SwissprotP495926e-87NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1U7WYH91e-136A0A1U7WYH9_NICSY; protein Dr1 homolog
STRINGXP_009782371.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.45e-91nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]