PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05773g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 241aa    MW: 26933.4 Da    PI: 4.8083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05773g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-181463255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +ykGVr +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a +aa  +l+g
  Niben101Scf05773g00002.1 14 KYKGVRLRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAAQFCLRG 63
                              8******99.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-291473No hitNo description
SMARTSM003809.4E-321477IPR001471AP2/ERF domain
PROSITE profilePS5103221.6281471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-291472IPR001471AP2/ERF domain
PfamPF008477.4E-121463IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-201472IPR016177DNA-binding domain
PRINTSPR003671.6E-91526IPR001471AP2/ERF domain
PRINTSPR003671.6E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEGQSQNQSN EPIKYKGVRL RKWGKWVSEV RLPNSRERIW LGSYDTAEKA ARAFDAAQFC  60
LRGPNAKFNF PENPPDISGG QRLSPAEIQV VAAQFANEYV YPQTTTQETA PISHVQNTHV  120
LKMENEETSQ SSTCDHDLIG KMDNATTADW SFLDMLENYP NNNAAAPAPQ PHISSLPPSP  180
AIGTNNFDFG YYPGLETLSS NLYSPLHFPT RTTTGNGDEH GYEDSGNGDE HFSQHSYLWN  240
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15171172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615403.11e-150PREDICTED: ethylene-responsive transcription factor ERF018-like
TrEMBLA0A314KZI31e-148A0A314KZI3_NICAT; Ethylene-responsive transcription factor erf017
STRINGXP_009615403.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-46ERF family protein