PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05767g03024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 416aa    MW: 45469.8 Da    PI: 4.8436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05767g03024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-1499143347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ l++++ +++G g+W++I+r+    Rt+ q+ s+ qk+
  Niben101Scf05767g03024.1  99 AWTAEEHRLFLQGLEKYGRGDWRSISRHYVVSRTPTQVASHAQKF 143
                               7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.704457IPR017877Myb-like domain
SMARTSM007170.036859IPR001005SANT/Myb domain
CDDcd001676.69E-41157No hitNo description
SuperFamilySSF466891.17E-81164IPR009057Homeodomain-like
PROSITE profilePS5129419.98992148IPR017930Myb domain
SuperFamilySSF466891.24E-1694149IPR009057Homeodomain-like
SMARTSM007178.1E-1396146IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.8E-1796146IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-1197139IPR009057Homeodomain-like
CDDcd001674.64E-1199144No hitNo description
PfamPF002498.7E-1299142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MNPDQTCNSS SWTKEEDRAF ETALAIYAGD SDQLMKIAAA VPQKSIPEIL QHYKKLVDDI  60
NDIEAGKVPL PRYGRMQGCS SRRSRLLSGA EVERRKGVAW TAEEHRLFLQ GLEKYGRGDW  120
RSISRHYVVS RTPTQVASHA QKFFSRLKDD NRVRRRRSIH DITTVDAGTT EPSQGQETEK  180
LNGPCGGQLQ WPITDYVTEA FDIGMFPLLG PVTNCMTDAI GGSYGVNPET LPFGTSVFSE  240
LNSSLPNVDD EFFLGVEDLI TVPTQGTSEA WRGVDTRTSP SLSWQPSFAR GTGMYTHPVN  300
GVGYEMEELI TKELVEATQV GPIVDTARLP LSIVDHIGVH GCTTSSSGAK NGFESTVGAR  360
EAGLSVDSNP LLSIPGTSGG GVYPCSNPSI KDDNIFDLED LFLDHMIGFD GKEGRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265247.10.0PREDICTED: uncharacterized protein LOC109242839 isoform X2
TrEMBLA0A314L2F70.0A0A314L2F7_NICAT; Transcription factor myb1r1
STRINGXP_009631817.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-49MYB family protein