PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05720g03001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 215aa    MW: 24967.7 Da    PI: 9.5701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05720g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161259148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W +eEd++l+++v+ +  g+W+tI+++ g+ R++k+c++rw +yl
  Niben101Scf05720g03001.1 12 RGFWKPEEDLILKNCVETHREGNWATISEKSGLMRSGKSCRLRWKNYL 59
                              799*******************************************97 PP

2Myb_DNA-binding49.87.7e-1665110148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf05720g03001.1  65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110
                               6789******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.217759IPR017930Myb domain
SuperFamilySSF466891.11E-279106IPR009057Homeodomain-like
SMARTSM007179.4E-131161IPR001005SANT/Myb domain
PfamPF002494.6E-141259IPR001005SANT/Myb domain
CDDcd001671.96E-91559No hitNo description
Gene3DG3DSA:1.10.10.601.1E-201566IPR009057Homeodomain-like
PROSITE profilePS5129423.78860114IPR017930Myb domain
SMARTSM007173.7E-1464112IPR001005SANT/Myb domain
PfamPF002492.2E-1465110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2267113IPR009057Homeodomain-like
CDDcd001673.49E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMDKEFKTRM KRGFWKPEED LILKNCVETH REGNWATISE KSGLMRSGKS CRLRWKNYLR  60
PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NKRSCRGKKK  120
HVKSKEANSR SSLGKESQEL SAETPSNKEV AANSVLDSWI EEMQDFNCSF LSPLSMNNMT  180
FLVDEPFIPI LDDIVLLEAF TSSGKEAWNE IQPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235003.11e-149PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF75e-60MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A1J6KXJ61e-148A0A1J6KXJ6_NICAT; Transcription factor myb82
STRINGXP_009593348.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-62myb domain protein 82