PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05676g03004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 29452.1 Da PI: 7.9464 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+ +v+++G ++W+ a+ g++Rt+k+c++rw +yl Niben101Scf05676g03004.1 8 KGPWSEQEDLQLAFYVNLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.7e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++ +G++ W++Iar+++ gRt++++k++w++++ Niben101Scf05676g03004.1 61 RGKMTPQEERLILELHFNWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.133 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-27 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.80E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.109 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 9.6E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.70E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAQEEARKGP WSEQEDLQLA FYVNLFGERR WDFLAKVSGL KRTGKSCRLR WVNYLHPGVK 60 RGKMTPQEER LILELHFNWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QDDRKNKASI 120 SPSSSISNCS SYFSSNSPDV DFIPINENNE RNFYDTGGLF GVHEQSSLQN AGKKKVGDQE 180 KGKSMKVYSM DEIWKDIELS EENETKIKPI LPSTMWEYCP DSTLWMTDEE ETKMFPQFYC 240 LDNQDNSFFT G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-26 | 5 | 110 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770621.1 | 1e-162 | PREDICTED: transcription factor MYB48-like | ||||
Refseq | XP_016514046.1 | 1e-162 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q4JL76 | 3e-72 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A1S4DKY0 | 1e-160 | A0A1S4DKY0_TOBAC; transcription factor MYB48-like | ||||
TrEMBL | A0A1U7W092 | 1e-160 | A0A1U7W092_NICSY; transcription factor MYB48-like | ||||
STRING | XP_009770621.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 5e-72 | myb domain protein 48 |
Publications ? help Back to Top | |||
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