PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05644g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 306aa MW: 33433.2 Da PI: 9.9476 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.4 | 7.9e-26 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e Niben101Scf05644g01001.1 77 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 120 79***************************************987 PP | |||||||
2 | QLQ | 45.9 | 1.7e-16 | 4 | 39 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l+y++++a++PvPpeLl ++ Niben101Scf05644g01001.1 4 SYFSLGQWQELELQALIYRHFIAGAPVPPELLNLVK 39 789****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-7 | 4 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.978 | 5 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.6E-11 | 6 | 38 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.141 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.9E-22 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MESSYFSLGQ WQELELQALI YRHFIAGAPV PPELLNLVKK SIITSPSSNY FSYPFQQYPR 60 YQQALMQSGY WGRAAMDPEP GRCRRTDGKK WRCSRDVVAG QKYCERHVHR GRSRSRKPVE 120 IPKPASNGGK LNNSTTVSHQ NLAKMAGHAA SYFSLSGPLP SIQTLHLNQR PTESKKGPLE 180 AQKDASADGK SSGQILRQFF DDWPSQLQEG DNVGSNSSSI VSATSLSISM PGNPSSDFSL 240 KLSTGGDGYN SYAHVSNVQR SAWRTSTGGG PLAEALRSST TTNSSPTSVL YQLPRGSTSE 300 ASYIST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246611.1 | 0.0 | PREDICTED: growth-regulating factor 3-like | ||||
TrEMBL | A0A1J6J7F4 | 0.0 | A0A1J6J7F4_NICAT; Growth-regulating factor 3 | ||||
STRING | XP_009771979.1 | 1e-178 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 3e-62 | growth-regulating factor 4 |