PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05629g01022.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 650aa MW: 73290.9 Da PI: 9.5773

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05629g01022.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.9	9.2e-111	243	613	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lL+ cA+av+ ++ + a++lL+++++ +sp gd mqRla yf+ +L+ar++ s++++y++l +++ s +++l+ ++l+ Niben101Scf05629g01022.1 243 LRTLLTLCAQAVAVENRRTANELLKKIRQSSSPMGDGMQRLAYYFADGLEARMSVSGTHIYRSLITWPVS---AADVLKGYQLLL 324 5789***************************************************************9...99****** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 ++P+ k+s + N+aI++ +e+++ vHiiD++i+ G+QWpaL+q L+sRp+gpp+l iTg++ p++g + ++eetg+rLa++ Niben101Scf05629g01022.1 325 AACPFRKISSFFSNKAIMKLAENASIVHIIDIGIMWGFQWPALIQRLSSRPGGPPKLHITGIDFPHPGfrPAVRVEETGRRLANY 409 **************************************************************9999*********** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 Ae+++vpfef + +a+++e+++le+L++++gE+l+ n+ ++ +llde+v+++s+r+ vL+l+++l+P+v+++ + +n++ Niben101Scf05629g01022.1 410 AESFNVPFEFIA-IAQTWEAITLEDLKINKGEVLVANCLYRFRNLLDETVDVNSPRNVVLNLIRKLNPDVFILGIVNGAYNAPFS 493 ********.7******************************************************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 +rf eal +ys+lfd+lea++pre +er+ +E+ +lgre++nv++ce aer+er et+++W+ r+++aGF+++pl+e+++ a Niben101Scf05629g01022.1 494 ITRFREALFHYSSLFDMLEANIPREVHERMLIEKNILGREAMNVITCEAAERIERPETYKRWQVRIMKAGFRQLPLDEEIMRMAT 578 ********************************************************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++ + ++ +s++l++gWk+r +++S W+ Niben101Scf05629g01022.1 579 ERFKEYDKN-FVIDVDSKWLLQGWKGRIGYALSTWK 613 ***66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.511	217	594	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-108	243	613	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MDIIVWTVVA FTMVEMMDVN LDLGGNDVTH VPRFLDGVAL RSTSWSPHSS SSTVPDVLVD 60 SPVRTLRIPD IFCDSDSIMQ FKKGVEEASK FIPRGNSLFA DVRYNVVGNE QNEERKDAVV 120 KVEKYGEKQS PERSRGKKNT LQEDVVDLTE ERNSKHSEVF SESTVRSEMF DRVLLSSAGK 180 VESALRETWQ IISRRNALEN GLSKGSNVKN SQRKKHGSKR DVVELSKNSQ AKKQGGKRDV 240 IDLRTLLTLC AQAVAVENRR TANELLKKIR QSSSPMGDGM QRLAYYFADG LEARMSVSGT 300 HIYRSLITWP VSAADVLKGY QLLLAACPFR KISSFFSNKA IMKLAENASI VHIIDIGIMW 360 GFQWPALIQR LSSRPGGPPK LHITGIDFPH PGFRPAVRVE ETGRRLANYA ESFNVPFEFI 420 AIAQTWEAIT LEDLKINKGE VLVANCLYRF RNLLDETVDV NSPRNVVLNL IRKLNPDVFI 480 LGIVNGAYNA PFSITRFREA LFHYSSLFDM LEANIPREVH ERMLIEKNIL GREAMNVITC 540 EAAERIERPE TYKRWQVRIM KAGFRQLPLD EEIMRMATER FKEYDKNFVI DVDSKWLLQG 600 WKGRIGYALS TWKSASNKDT SKEVPIKAPE TGKEKPAPAS GDGAGARLGS

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MDIIVWTVVA FTMVEMMDVN LDLGGNDVTH VPRFLDGVAL RSTSWSPHSS SSTVPDVLVD  60
SPVRTLRIPD IFCDSDSIMQ FKKGVEEASK FIPRGNSLFA DVRYNVVGNE QNEERKDAVV  120
KVEKYGEKQS PERSRGKKNT LQEDVVDLTE ERNSKHSEVF SESTVRSEMF DRVLLSSAGK  180
VESALRETWQ IISRRNALEN GLSKGSNVKN SQRKKHGSKR DVVELSKNSQ AKKQGGKRDV  240
IDLRTLLTLC AQAVAVENRR TANELLKKIR QSSSPMGDGM QRLAYYFADG LEARMSVSGT  300
HIYRSLITWP VSAADVLKGY QLLLAACPFR KISSFFSNKA IMKLAENASI VHIIDIGIMW  360
GFQWPALIQR LSSRPGGPPK LHITGIDFPH PGFRPAVRVE ETGRRLANYA ESFNVPFEFI  420
AIAQTWEAIT LEDLKINKGE VLVANCLYRF RNLLDETVDV NSPRNVVLNL IRKLNPDVFI  480
LGIVNGAYNA PFSITRFREA LFHYSSLFDM LEANIPREVH ERMLIEKNIL GREAMNVITC  540
EAAERIERPE TYKRWQVRIM KAGFRQLPLD EEIMRMATER FKEYDKNFVI DVDSKWLLQG  600
WKGRIGYALS TWKSASNKDT SKEVPIKAPE TGKEKPAPAS GDGAGARLGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-49	250	612	26	378	Protein SCARECROW
5b3h_A	6e-49	250	612	25	377	Protein SCARECROW
5b3h_D	6e-49	250	612	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019245281.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_019245282.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_019245283.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1J6IQX8	0.0	A0A1J6IQX8_NICAT; Scarecrow-like protein 14
STRING	XP_009607974.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]