PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05618g05002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 25158.4 Da PI: 9.2983 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ Niben101Scf05618g05002.1 73 RGHITPQEEGIIIELHGLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 117 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.911 | 12 | 67 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.24E-23 | 15 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.013 | 16 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-14 | 18 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00152 | 19 | 67 | No hit | No description |
PROSITE profile | PS51294 | 24.592 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-9 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVGMTSWGAN SDQQWRKGPW TPEEDKLLSE YDLVLSFSNI YIENLGVGEA GLNRTGKSCR 60 LRWVNYLRPG LKRGHITPQE EGIIIELHGL WGNKWSTIAR YLPGRTDNEI KNYWRTHFKK 120 KQKASVRQDK RKTQRQRNQQ QQHCITANKL SPKAEEAIMQ KSNEKIDNEY QDAVTFINYH 180 QSMDPVMDLP PVTTSSDISH AWTDTIPMDG LWGGLWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-20 | 17 | 121 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234159.1 | 1e-113 | PREDICTED: myb-related protein 340-like | ||||
Swissprot | Q4JL84 | 1e-41 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A1J6KBZ4 | 1e-111 | A0A1J6KBZ4_NICAT; Transcription factor myb59 | ||||
STRING | XP_009802593.1 | 1e-110 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 5e-57 | myb domain protein 121 |
Publications ? help Back to Top | |||
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