PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05618g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25152.7 Da PI: 8.4791 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.1 | 2.5e-09 | 49 | 76 | 27 | 54 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkle 54 +++r++lg+f tae+Aa+a+++a++ + Niben101Scf05618g01002.1 49 RKTRIWLGTFETAEDAARAYDEAARLMC 76 349*********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.774 | 10 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-12 | 40 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-5 | 48 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-12 | 48 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-19 | 48 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.30E-18 | 50 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSVPISQLVT TNEIKKKNKE ALRFLKHFRK GQLQLAFAFI NGETTTLQRK TRIWLGTFET 60 AEDAARAYDE AARLMCGPRA RNNFPYNPNM PQTSSSKLLS ATLTAKLHKC YMASLQMAKN 120 SAQEQHQQPP PRKIQTSYAQ TAVANAGNHV PYETKPQMLM SKPTFLAQQQ EAAAGVNWGV 180 MKVEAVEHTP QFINTLEEDH IEQIIEELLD DGSIELCSVV SSHH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619132.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_016513393.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 7e-46 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A1S4DJ35 | 1e-117 | A0A1S4DJ35_TOBAC; ethylene-responsive transcription factor ERF003-like | ||||
STRING | XP_009619132.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-25 | ERF family protein |
Publications ? help Back to Top | |||
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