PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05610g03025.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 604aa    MW: 65172.9 Da    PI: 8.1029
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05610g03025.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.4e-25231275145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Niben101Scf05610g03025.1 231 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVEG 275
                               79****************************************985 PP
2QLQ59.88e-21168204137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yK+L+an++vP++Ll +++k
  Niben101Scf05610g03025.1 168 GPFTPSQWMELEHQALIYKHLVANVQVPHQLLIPLKK 204
                               59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-12168204IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.81169204IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-14169202IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954231275IPR014977WRC domain
PfamPF088793.1E-21232274IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEFGGMMTME TIQESGNNIS KTVNSPTETN NSSKISNGSG QQLKQERSGA SDDTNWRPSK  60
VQRAAADDYS ALCKQMTQQQ GPTTPTLFMR SASPNNGRGH STMLSFSSPK SEELIPFLST  120
NNASRQDSSK SLAFPLFDSG SYYSRASAYA SGGSNESTRG PFVARFRGPF TPSQWMELEH  180
QALIYKHLVA NVQVPHQLLI PLKKSLNPYA FSGLSSGGWG TFHLGFTGNT DPEPGRCRRT  240
DGKKWRCSRE AVPDQKYCER HINRGRHRSR KPVEGQNGHA VSGSTTSKVA SVAPSSSATV  300
ISSSGTSNSL GAVQHQFNSL QPSAANPSNE QLVNRMQDQK DVSMVSPTIC LKPKASAISN  360
QKQHNGFELS SLSEFGLVSS DSLLNPSQRS SFVNPKNSNA FIDFNDQDQT EQHPVHHFID  420
GWTKEQSSSA SRSWPDELKS DWTQLSMSIP MAASDFSSSS NSPRQEKLTL SPLRLSRDFD  480
PMQMGLGVTN SHGEPMQKTT NWLPVSWENA LGGPLGEVLN STAGNSGDAK NSSALNLATE  540
MWDNSPPFGS SPTGVLQKST FVSLSNSSSG GSPRADSSKV HEGAGMCDEV IGSTLASSLC  600
IPSM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589483.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1S3XCF00.0A0A1S3XCF0_TOBAC; growth-regulating factor 1-like
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-108growth-regulating factor 1