PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05565g02022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 179aa MW: 19903 Da PI: 8.8134 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.1 | 1e-28 | 9 | 63 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ +++++ +a+l+CaACgCHRnFHR+ Niben101Scf05565g02022.1 9 NIYRECLRNHAASLGSYATDGCGEFTLDDNNTsPGSASLHCAACGCHRNFHRKVI 63 57*************************9776655699***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-24 | 10 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-23 | 11 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-18 | 11 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.148 | 11 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.04E-16 | 95 | 165 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-28 | 98 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 106 | 164 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MQGDKANDNI YRECLRNHAA SLGSYATDGC GEFTLDDNNT SPGSASLHCA ACGCHRNFHR 60 KVIYGASYSN NSSRGREIMA ADQLTDYGGG RMSAALTAEE SPRSGKKRFR TKFTTDQKEK 120 MLAFAEKLGW TLQRKDEENE TERFCREVGV SRKVFKVWMH NHKNNTSSVS TGNASSLTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 107 | 168 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776697.1 | 1e-120 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_016437739.1 | 1e-120 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9M9S0 | 1e-40 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A1S3XD31 | 1e-118 | A0A1S3XD31_TOBAC; zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A1U7W9L7 | 1e-118 | A0A1U7W9L7_NICSY; zinc-finger homeodomain protein 5-like | ||||
STRING | XP_009776697.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 6e-43 | homeobox protein 31 |