PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05551g01007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 405aa    MW: 46815.2 Da    PI: 5.4056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05551g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13145186143
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                               +g WT eEd  l+++v+++G + W+ Ia+t+  gR +kqc++r
  Niben101Scf05551g01007.1 145 KGQWTIEEDRVLIQLVEKFGVRKWSQIAQTLK-GRIGKQCRER 186
                               799****************************9.********97 PP

2Myb_DNA-binding55.71.1e-17246286345
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                WT+eEd +l+ a+++ G++ W+ Ia++++ gRt++++k++w+
  Niben101Scf05551g01007.1 246 LWTEEEDRILISAHAEVGNK-WSEIAKRIP-GRTENSIKNHWN 286
                               6*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.918140189IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-16144186IPR009057Homeodomain-like
SMARTSM007173.1E-6144193IPR001005SANT/Myb domain
PfamPF002492.3E-11145186IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-15146208IPR009057Homeodomain-like
CDDcd001673.23E-9148186No hitNo description
PROSITE profilePS500903.973187208IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-4187208IPR009057Homeodomain-like
SuperFamilySSF466897.98E-17239296IPR009057Homeodomain-like
PROSITE profilePS5129423.961239293IPR017930Myb domain
SMARTSM007174.9E-17243291IPR001005SANT/Myb domain
PfamPF002492.3E-16246286IPR001005SANT/Myb domain
CDDcd001677.02E-13247289No hitNo description
Gene3DG3DSA:1.10.10.601.1E-19247287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNDVFCTLSK DYLQDFHHLD LSFSLPTFNN LDHNFMIETN GYDPLFDPFS NIMDNYSSMD  60
QDFNFNYEFK PFDQNGTSDS TLVNFNVVPD ESSCITSGDN NGNYGQKEIG GRKNKKLIKS  120
NENSLSSSSM RKLGRGRKKY SKSAKGQWTI EEDRVLIQLV EKFGVRKWSQ IAQTLKGRIG  180
KQCRERPDIK KDLWTEEEDR ILISAHAEEI NGPKLQKEYL EELKIQLKTI GMQQKEGNSQ  240
DENKDLWTEE EDRILISAHA EVGNKWSEIA KRIPGRTENS IKNHWNATKR RQFSRRKCRT  300
KWPRPSSLLQ NYIKSLNFEK VSSSSTNGTT LNNNAPKLEP FELCDKGNIQ QLDADYDFSQ  360
VPEFGLDDKL FDDLEIPYNE LPQLMQAGEV NKEAELMDFI SSVNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-271452924104C-Myb DNA-Binding Domain
1msf_C2e-271452924104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469577.10.0PREDICTED: transcription factor MYB98-like
TrEMBLA0A1S3ZYR70.0A0A1S3ZYR7_TOBAC; transcription factor MYB98-like
STRINGXP_009595322.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-56myb domain protein 98