PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05551g01007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 46815.2 Da PI: 5.4056 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 145 | 186 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +g WT eEd l+++v+++G + W+ Ia+t+ gR +kqc++r Niben101Scf05551g01007.1 145 KGQWTIEEDRVLIQLVEKFGVRKWSQIAQTLK-GRIGKQCRER 186 799****************************9.********97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 246 | 286 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l+ a+++ G++ W+ Ia++++ gRt++++k++w+ Niben101Scf05551g01007.1 246 LWTEEEDRILISAHAEVGNK-WSEIAKRIP-GRTENSIKNHWN 286 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.918 | 140 | 189 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-16 | 144 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-6 | 144 | 193 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 145 | 186 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.64E-15 | 146 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.23E-9 | 148 | 186 | No hit | No description |
PROSITE profile | PS50090 | 3.973 | 187 | 208 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-4 | 187 | 208 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.98E-17 | 239 | 296 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.961 | 239 | 293 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-17 | 243 | 291 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 246 | 286 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.02E-13 | 247 | 289 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 247 | 287 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MNDVFCTLSK DYLQDFHHLD LSFSLPTFNN LDHNFMIETN GYDPLFDPFS NIMDNYSSMD 60 QDFNFNYEFK PFDQNGTSDS TLVNFNVVPD ESSCITSGDN NGNYGQKEIG GRKNKKLIKS 120 NENSLSSSSM RKLGRGRKKY SKSAKGQWTI EEDRVLIQLV EKFGVRKWSQ IAQTLKGRIG 180 KQCRERPDIK KDLWTEEEDR ILISAHAEEI NGPKLQKEYL EELKIQLKTI GMQQKEGNSQ 240 DENKDLWTEE EDRILISAHA EVGNKWSEIA KRIPGRTENS IKNHWNATKR RQFSRRKCRT 300 KWPRPSSLLQ NYIKSLNFEK VSSSSTNGTT LNNNAPKLEP FELCDKGNIQ QLDADYDFSQ 360 VPEFGLDDKL FDDLEIPYNE LPQLMQAGEV NKEAELMDFI SSVNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-27 | 145 | 292 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 145 | 292 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469577.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A1S3ZYR7 | 0.0 | A0A1S3ZYR7_TOBAC; transcription factor MYB98-like | ||||
STRING | XP_009595322.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-56 | myb domain protein 98 |