PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05541g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 358aa    MW: 40640.6 Da    PI: 6.9313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05541g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l++ ++ +G  +W+++++  g+ R++k+c++rw +yl
  Niben101Scf05541g00002.1 13 RGLWSPEEDEKLIRHITTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                              788*******************************************97 PP
2Myb_DNA-binding48.61.9e-1566108145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               r+ ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w+
  Niben101Scf05541g00002.1  66 RDCFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 108
                               6789******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.958860IPR017930Myb domain
SuperFamilySSF466898.99E-2810107IPR009057Homeodomain-like
SMARTSM007171.1E-121262IPR001005SANT/Myb domain
PfamPF002491.0E-141360IPR001005SANT/Myb domain
CDDcd001671.76E-101660No hitNo description
PROSITE profilePS5129424.2661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2364116IPR009057Homeodomain-like
SMARTSM007171.9E-1465113IPR001005SANT/Myb domain
PfamPF002495.9E-1466109IPR001005SANT/Myb domain
CDDcd001671.30E-1069108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIRHITT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRDCFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSA IRKKLIAQGF  120
DPNTHNLLSR NHHQNNNIKS SCKSKTSNHP NSTSVFTIET LSSSKEVGAI SMDIIKASLA  180
ALPPIATKTT ITLPPSQTSW GWLRESSLTT TTYNYVNPIS VPTTTNIENL NLATIEYQNQ  240
STSNNLLSSS SLTPSGFGII NENCMWDVTG FEPQLIRSIN GQEEVQLVQE ERAQVLQLQE  300
NICQEVYKVN HEFSNNGQIS ENVTFDNSNF DFEFLDSALM PYEIYTNVNS LDQLAWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781591.10.0PREDICTED: myb-related protein 330-like
SwissprotQ8VZQ22e-67MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A1U7WWA60.0A0A1U7WWA6_NICSY; myb-related protein 330-like
STRINGXP_009781591.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-80myb domain protein 67
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]